ccl27a


Basic Information

Item Value
gene id ccl27a
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 15950262 ~ 15952679 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU157827
CTTAGACAAGCCAGAGGATTAGAGTAGGCGTTACTAAGAATGCAAATTCTAACACTGTGTACCTCCAAAGTGAGAGTGAAAGTGTGCAAATGAAGAAAAGGTTAATCTGCACACGTTCACTCTAACTCTCACCATGGAGCGCCAAACTGCAGCCGTGTTGCTTCTTCTCCTGTGtgccatcatcttcatcactgcTGAAGGACGCATCTCATCATGCTGCGTAGGCACTACAGATAAGATTAACCAGcacatattaaaaaaagctCAGAAATATGCCATTCAGTCAGATGCTGGACCATGTGAACTTAAAGCGCTGGTCTTGTATGTGGGAATGAAGAAATTCTGCCTTGATcctaagacagaaaaaaaggtgaaaCACATGCTGAGGAAGAAGCATAGGCATGCccaaaaacagcaaaagcagTGATGACATTTTCCTAAACAATGTCCCACTGCAGggagtctttcttttttccaccagGATGTCTTTAATGATTATACTGGATATATGTGGTGTTTTGTATTCAAAGGCAGAAATCATT
>XM_034306998.1
GTACCTCCAAAGTGAGAGTGAAAGTGTGCAAATGAAGAAAAGGTTAATCTGCACACGTTCACTCTAACTCTCACCATGGAGCGCCAAACTGCAGCCGTGTTGCTTCTTCTCCTGTGtgccatcatcttcatcactgcTGAAGCAGGACGCATCTCATCATGCTGCGTAGGCACTACAGATAAGATTAACCAGcacatattaaaaaaagctCAGAAATATGCCATTCAGTCAGATGCTGGACCATGTGAACTTAAAGCGCTGGTCTTGTATGTGGGAATGAAGAAATTCTGCCTTGATcctaagacagaaaaaaaggtgaaaCACATGCTGAGGAAGAAGCATAGGCATGCccaaaaacagcaaaagcagTGATGACATTTTCCTAAACAATGTCCCACTGCAGggagtctttcttttttccaccagGATGTCTTTAATGATTATACTGGATATATGTGGTGTTTTGTATTCAAAGGCAGAAATCATTACAGctaataaaattgtttttggttttgaaacaacaataaaataatgaagcTGGTTTCAAAAT
>XM_034306999.1
CTCCAAAGTGAGAGTGAAAGTGTGCAAATGAAGAAAAGGTTAATCTGCACACGTTCACTCTAACTCTCACCATGGAGCGCCAAACTGCAGCCGTGTTGCTTCTTCTCCTGTGtgccatcatcttcatcactgcTGAAGGACGCATCTCATCATGCTGCGTAGGCACTACAGATAAGATTAACCAGcacatattaaaaaaagctCAGAAATATGCCATTCAGTCAGATGCTGGACCATGTGAACTTAAAGCGCTGGTCTTGTATGTGGGAATGAAGAAATTCTGCCTTGATcctaagacagaaaaaaaggtgaaaCACATGCTGAGGAAGAAGCATAGGCATGCccaaaaacagcaaaagcagTGATGACATTTTCCTAAACAATGTCCCACTGCAGggagtctttcttttttccaccagGATGTCTTTAATGATTATACTGGATATATGTGGTGTTTTGTATTCAAAGGCAGAAATCATTACAGctaataaaattgtttttggttttgaaacaacaataaaataatgaagcTGGTTTCAAAAT

Function

NR:

description
C-C motif chemokine 28-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU157827 False 542 TUCP 0.42 3 15950325 15952679
XM_034306998.1 True 550 mRNA 0.40 3 15950262 15952621
XM_034306999.1 False 543 mRNA 0.40 3 15950262 15952617

Neighbor

gene id symbol gene type direction distance location
slc35d2 slc35d2 coding downstream 4275 15930317 ~ 15945987 (-)
fbxl17 fbxl17,LOC102776382,LOC107570989 coding downstream 50814 15676192 ~ 15899448 (-)
efna5b efna5,LOC108265807,LOC108430322,LOC100702629,LOC103397673,LOC106585191 coding downstream 327074 15537879 ~ 15623188 (-)
mfsd14bb LOC108265778,LOC108430319,LOC103035659,LOC106587031,LOC105890793 coding downstream 534812 15403229 ~ 15415450 (-)
LOC113528824 NA coding downstream 563732 15385297 ~ 15386530 (-)
ubox5 ubox5 coding upstream 11978 15964657 ~ 15968679 (-)
sfr1 NA coding upstream 19953 15972632 ~ 15976801 (-)
lzts3b lzts3,LOC108265122 coding upstream 27486 15980165 ~ 15991988 (-)
LOC117597774 fabp1,LOC108430333 coding upstream 50635 16003314 ~ 16005055 (-)
LOC113527457 fabp1,LOC108430333 coding upstream 58349 16011028 ~ 16012661 (-)
G133584 NA non-coding downstream 28178 15921276 ~ 15922084 (-)
G133580 NA non-coding downstream 43660 15906282 ~ 15906602 (-)
G133576 NA non-coding downstream 44294 15904862 ~ 15905968 (-)
G133573 NA non-coding downstream 47953 15854000 ~ 15902309 (-)
G133568 NA non-coding downstream 141831 15780296 ~ 15808431 (-)
G133664 smyd1b non-coding upstream 46329 15999008 ~ 16008327 (-)
G133665 NA non-coding upstream 48153 16000832 ~ 16001492 (-)
G133663 NA non-coding upstream 53079 16005758 ~ 16013551 (-)
G133676 NA non-coding upstream 91583 16044262 ~ 16044582 (-)
G133698 LOC108265827,LOC108430339 non-coding upstream 164085 16116764 ~ 16118223 (-)
LOC113532496 NA other downstream 770066 15177787 ~ 15180196 (-)
sema6a sema6a,LOC107661172,LOC107663594,LOC106585847 other downstream 887040 15001347 ~ 15063222 (-)
ccser1 ccser1 other downstream 1130534 14742482 ~ 14819728 (-)
grid2 grid2,LOC107751431,LOC107594506,LOC107711862,LOC107669587 other downstream 1225579 14330361 ~ 14724683 (-)
atoh1a atoh1 other downstream 1625845 14321909 ~ 14324417 (-)
rnf165b rnf165,rnf165b,LOC108265796,LOC108430336,LOC107726876,LOC107569673 other upstream 132390 16085069 ~ 16099247 (-)
ikbkb ikbkb other upstream 2096069 18048748 ~ 18084489 (-)
dynll1 dynll1,LOC103397138,LOC107559583 other upstream 2300906 18253585 ~ 18262218 (-)
ndufa4l2a LOC108434410,LOC108265249,LOC107678808,LOC107571901,LOC103362772 other upstream 3743719 19696398 ~ 19698530 (-)
LOC113533329 LOC108265714 other upstream 4020885 19973564 ~ 20005390 (-)

Expression


Co-expression Network