RNA id: TU157827


Basic Information

Item Value
RNA id TU157827
length 542
RNA type TUCP
GC content 0.42
exon number 3
gene id ccl27a
representative False

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 15950262 ~ 15952679 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTTAGACAAGCCAGAGGATTAGAGTAGGCGTTACTAAGAATGCAAATTCTAACACTGTGTACCTCCAAAGTGAGAGTGAAAGTGTGCAAATGAAGAAAAGGTTAATCTGCACACGTTCACTCTAACTCTCACCATGGAGCGCCAAACTGCAGCCGTGTTGCTTCTTCTCCTGTGtgccatcatcttcatcactgcTGAAGGACGCATCTCATCATGCTGCGTAGGCACTACAGATAAGATTAACCAGcacatattaaaaaaagctCAGAAATATGCCATTCAGTCAGATGCTGGACCATGTGAACTTAAAGCGCTGGTCTTGTATGTGGGAATGAAGAAATTCTGCCTTGATcctaagacagaaaaaaaggtgaaaCACATGCTGAGGAAGAAGCATAGGCATGCccaaaaacagcaaaagcagTGATGACATTTTCCTAAACAATGTCCCACTGCAGggagtctttcttttttccaccagGATGTCTTTAATGATTATACTGGATATATGTGGTGTTTTGTATTCAAAGGCAGAAATCATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157791 lncRNA downstream 28241 15921276 ~ 15922084 (-) True G133584
TU157787 lncRNA downstream 43723 15906282 ~ 15906602 (-) True G133580
TU157780 lncRNA downstream 44357 15904862 ~ 15905968 (-) True G133576
TU157776 lncRNA downstream 48016 15854000 ~ 15902309 (-) True G133573
TU157771 lncRNA downstream 141894 15780296 ~ 15808431 (-) True G133568
TU157912 lncRNA upstream 46329 15999008 ~ 16008327 (-) True G133664
TU157913 lncRNA upstream 46329 15999008 ~ 16008327 (-) False G133664
TU157914 lncRNA upstream 48153 16000832 ~ 16001492 (-) True G133665
TU157910 lncRNA upstream 53079 16005758 ~ 16013551 (-) True G133663
TU157925 lncRNA upstream 91583 16044262 ~ 16044582 (-) True G133676
XM_026928586.2 mRNA downstream 4338 15930317 ~ 15945987 (-) True slc35d2
XM_026916783.2 mRNA downstream 50877 15748391 ~ 15899448 (-) True fbxl17
XM_026916757.2 mRNA downstream 50878 15676192 ~ 15899447 (-) False fbxl17
XM_026916766.2 mRNA downstream 50895 15676192 ~ 15899430 (-) False fbxl17
XM_026916774.2 mRNA downstream 51076 15676192 ~ 15899249 (-) False fbxl17
XM_034306264.1 mRNA upstream 11978 15964657 ~ 15968679 (-) True ubox5
XM_026915265.2 mRNA upstream 19953 15972632 ~ 15976801 (-) True sfr1
XM_026915215.2 mRNA upstream 27486 15980165 ~ 15991988 (-) False lzts3b
XM_026915207.2 mRNA upstream 27486 15980165 ~ 15991969 (-) True lzts3b
XM_034306262.1 mRNA upstream 50635 16003314 ~ 16005055 (-) True LOC117597774
trnad-guc_2 other downstream 614658 15335596 ~ 15335667 (-) True trnad-guc_2
TU157316 other downstream 770201 15177789 ~ 15180124 (-) False LOC113532496
XR_003403097.2 other downstream 1225642 14332392 ~ 14724683 (-) False grid2
XR_004578552.1 other downstream 1765388 14178891 ~ 14184937 (-) False hsd17b3
trnah-gug_9 other downstream 2870919 13079335 ~ 13079406 (-) True trnah-gug_9
XR_004578582.1 other upstream 143953 16096632 ~ 16099234 (-) False rnf165b
TU159072 other upstream 2114577 18067256 ~ 18084483 (-) False ikbkb
TU159186 other upstream 2300906 18253585 ~ 18262218 (-) False dynll1
TU159181 other upstream 2306906 18259585 ~ 18261956 (-) False dynll1
TU160210 other upstream 4038184 19990863 ~ 19993744 (-) False LOC113533329

Expression Profile