RNA id: XR_004578582.1


Basic Information

Item Value
RNA id XR_004578582.1
length 1554
RNA type misc_RNA
GC content 0.39
exon number 2
gene id rnf165b
representative False

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 16085069 ~ 16099247 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTTCATGTCCAGCTTTGTGTTGATCATACAGCAGCAGTCCGCTGCTCTCCGTCTTTGTCCTCAAGGCAACTGCGCGCTCTGCCTTGAATGTAACGCTAGCTACTTTTTATTTCTACTCGAGTATTTTGAGCCATCTATTTAAAGACTGTTAAACGATCAGAAGAATTCAAAGATGGTGTTAGTACACGTTGGATACCTGGTTCTACCCGTTTTCGGCTCAGTAAGAAATAGAgTATCGAGGCTGGCTCTACATTCTGCATTATCCGATCTTTGTCGTCCCCCCTCCATTGTGTAGCTAATGATCATCTGCTGCTGTGTGGTGTGGCCTCTGCCTGTTCTCTGCATTTAGCTGTTTTGTGATCCCCCTTCTTCATTTCCTCTTTCCATCCGAAGACGACATTGGTATTTGAACACCCAAGAACAGTGCTCCCTTATgttaaagactaaaaaaaaataacattgagCTAAAATGTGTTTCTCTATGTTAAGTTGACATAGTTAACCCGTATACAGTAGCATTAGAGAAGTTGACTCATGTACATCCCTTCCAGCCTTGGTAGTCAACATGTGTAAATTCCTGTAAAGTGGATGCATTTTGCAGTTCATATTTCTTAAACGAAGAAAGCATCATGCCTTCGTACAAGCAAAGGTGCATTGTACCCATCCAATGTgttggctttatttatttatttattggattcgggcatatttataattattttactcCCTGTATCACAGGTTCCTAaccttggtcctggagtacctcctgtcctgcacattttagtgttttctctgctcccaacatacctgattcaactaatctgGTAAACAAGAacccttcctgagttgaagtgggtgtgttcgagcagggaaaacacacaaatgtgcaggacacgggtactccaggaccagggctgggaacctgAAGAAGAGATATGGCATTAAATAAGTCTCTAATGAGCAAGAAATAAAGCATGCAATGTAATATAAAGGCCACACAAATATGTTACACTGCACCTGTGTTGATCACCCAGACATGTGCCACATGGCTTTAACAACTGCCTAAATAAGGCTTATCAATACACACAGCGTAAAAAAATTATGCTAATTAATTAAGCACTTGACTTGATCTCTGCACTAACAAATTCCAAAATGCTATCCATTTCACAGGGATGTTTAATTTCCTGCACTGCTACAAATATCCTCTATTAGAGTGAAAATGTCTATTGTTTGGTTGTGGTTTCTCTACCTTTTGTTCTGGTAATAGACTTCAATGCATGAATcacattattcatattatttttattcaacattGATTAGACTCCAATGTAATCTTTCTGTAGAAAAGATGTACcctgctgtactgtaatgtgcTATAGCCAACACATCTGCTCATTGGATGCcgcttttgttctgtttaacCCTGTACGGAGCATGGTGGGCCTTGCCTTTGGTcaatgttgttttatttgttgcatggtattattattattattatgacacaAATCCACCTATACTAATATTTTTCAATAAAGAATATAGTATTTTTCCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157925 lncRNA downstream 52050 16044262 ~ 16044582 (-) True G133676
TU157910 lncRNA downstream 83081 16005758 ~ 16013551 (-) True G133663
TU157912 lncRNA downstream 88305 15999008 ~ 16008327 (-) True G133664
TU157913 lncRNA downstream 88305 15999008 ~ 16008327 (-) False G133664
TU157914 lncRNA downstream 95140 16000832 ~ 16001492 (-) True G133665
TU157950 lncRNA upstream 17530 16116764 ~ 16118223 (-) True G133698
TU157949 lncRNA upstream 21123 16120357 ~ 16124737 (-) True G133697
TU157976 lncRNA upstream 60630 16159864 ~ 16160440 (-) True G133720
TU158075 lncRNA upstream 172400 16271634 ~ 16272207 (-) True G133810
TU158202 lncRNA upstream 349259 16448493 ~ 16448798 (-) True G133914
XM_026915276.2 mRNA downstream 74728 16019749 ~ 16021904 (-) True avp
XM_034306263.1 mRNA downstream 77927 16017259 ~ 16018705 (-) True LOC117597775
XM_026915289.2 mRNA downstream 83971 16011028 ~ 16012661 (-) True LOC113527457
XM_034306262.1 mRNA downstream 91577 16003314 ~ 16005055 (-) True LOC117597774
XM_026915215.2 mRNA downstream 104644 15980165 ~ 15991988 (-) False lzts3b
XM_026910719.2 mRNA upstream 87456 16186690 ~ 16200532 (-) True adra1aa
XM_034306377.1 mRNA upstream 180068 16279302 ~ 16288750 (-) True LOC113524473
XM_026910771.2 mRNA upstream 189824 16289058 ~ 16293702 (-) True tmem127
XM_026910765.2 mRNA upstream 202973 16302207 ~ 16305565 (-) True ufd1l
XM_026910776.2 mRNA upstream 224406 16323640 ~ 16325725 (-) True cldn5a
TU157827 other downstream 143953 15950325 ~ 15952679 (-) False ccl27a
trnad-guc_2 other downstream 760965 15335596 ~ 15335667 (-) True trnad-guc_2
TU157316 other downstream 916508 15177789 ~ 15180124 (-) False LOC113532496
XR_003403097.2 other downstream 1371949 14332392 ~ 14724683 (-) False grid2
XR_004578552.1 other downstream 1911695 14178891 ~ 14184937 (-) False hsd17b3
TU159072 other upstream 1968022 18067256 ~ 18084483 (-) False ikbkb
TU159186 other upstream 2154351 18253585 ~ 18262218 (-) False dynll1
TU159181 other upstream 2160351 18259585 ~ 18261956 (-) False dynll1
TU160210 other upstream 3891629 19990863 ~ 19993744 (-) False LOC113533329
TU160320 other upstream 3941063 20040297 ~ 20040688 (-) True G135737

Expression Profile