LOC113524473 (LOC108265577)


Basic Information

Item Value
gene id LOC113524473
gene name LOC108265577
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 16279302 ~ 16288750 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034306377.1
TTGATTCCTGCTGAAGACCACAGGAGGTTTTGCGATCGTGGAGATGTGCTCTGCAAGGCTTCGAGGATAAGTTCATCCAGCTGGAGCCGGGTTGGGACCCTCGATCGGGCTCGTTACCCTCTTCTATTTTCCTCTGAATGTGAGCATAAAGCAGCACCATCAGACAGACACGGCCATAAGACAACTCAGACCAGTGTAGGGATGGACACGGCCGGGGCGAGGGTAGCCTCACTGGAGAAAGACATCCTGTTCCTTCAGCAGACGCATAAAACCACACTGGAGAAGCTACACGAGGAGATTGAACACCTGAAGCGAGCTAACAAAGAGTTTCAGTATCAACTGATTATGGGAGAACAGCAGCATCCTCCAAGAGAGCCTAGGCCAGAGGGCTTACATGAAAAGCAATGCCAGACTGGTGTCATCGGCTCTGAAGAGAAGCCAGAGACAAGATGGCATTGTGTAGAACACAATGAGGCCATCATGATGTCTCTGTTTCCTCTGAGGATCCAAGACGGTTCATCCCGGCCTCCACGCACTCCAACCCTGCAGGAGTGTGAGGCTTTGATCCGACAGCTCTATAACGCCAATACCTTGCAGTCTCAGGAGCTGTTGCGGGTGAAGGCTGTTCTCAGAGATGTGGTGAATAAAAAGAAACTCTCACCTGAGGTCTGCAATATAACAAAGACATATCTCTCTGACAACACAAGAAGTGGAGAGTTGACACACATTCCAAAACTAACTCTTAAGCCCTTGCCAAAAATACAACAACAGACCcaggtgagtgtgagagagaaggtTATTCTGCCTACCATCAGACAGACCATGAGCAGCAACCTGACAGAGAGGCAGAAACGTGCCCAGGCCGTACACAAAATGCGCCTCAGAAGAGCCATCTTCTCCTAGCTATATAACAGCTATATGCATCAGTAAacataatgaattaaaaatttgcttctatttttattctgaattgTTATGTTTTATCTCCTACTTTTTTCTCCCACATTGTCATCTTGCAGAAGTTTTCTTATTTGACCTGTGCATCTTCTCAGATTGTGGATAATGACAGTTGACATCAGAGTGTCAGTGCCTTAAATGCTATAATTTGTTTTGGAATATTGGATGGTAGCTGTTGatatcttgttttgttttctttctgtttttttttttcagtttgcccTGTAAGTTATAATAAATTACCCCTGATATCTGTTATATCCAGTGGATTAGGGCtttaaaacactaaacacagtaGGAATTCACATGGACACAAATTCTGAAAacatataagtaataaataatagtattaTTAAAGTATTAGCCTACATAACTTTTACTTGTGAAGCGGTATCAAGGCAATATCAAATTAAATAAGGCCAGtatgatatgtaaggaataaaacataatggggTGTGTTATTTTCCAGGCAAAAATAATCTACGTGGTGTGGTGTGGTTACCACCCCTAAGcgtattattttcctataaaagcacatcccaaactgttttatttctcttatagcacagcaatttaccaacaaaaGGACAACACAGCATAC

Function

NR:

description
PREDICTED: coiled-coil domain-containing protein 74A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034306377.1 True 1558 mRNA 0.42 9 16279302 16288750

Neighbor

gene id symbol gene type direction distance location
adra1aa LOC108264882,LOC108430341,LOC107714574 coding downstream 78770 16186690 ~ 16200532 (-)
avp LOC108265942 coding downstream 257398 16019749 ~ 16021904 (-)
LOC117597775 fabp1,LOC103043953,LOC108430333 coding downstream 260597 16017259 ~ 16018705 (-)
LOC113527457 fabp1,LOC108430333 coding downstream 266641 16011028 ~ 16012661 (-)
LOC117597774 fabp1,LOC108430333 coding downstream 274247 16003314 ~ 16005055 (-)
tmem127 tmem127,LOC107552193,LOC107713035,LOC106579884,LOC106585551 coding upstream 308 16289058 ~ 16293702 (-)
ufd1l ufd1l coding upstream 13457 16302207 ~ 16305565 (-)
cldn5a cldn5,LOC107670982 coding upstream 34890 16323640 ~ 16325725 (-)
srrd srrd coding upstream 130292 16419042 ~ 16423586 (-)
pptc7a pptc7,pptc7a,LOC107552188,LOC107553043,LOC107671007,LOC107699657,LOC103044306,LOC108430358 coding upstream 150465 16439215 ~ 16446758 (-)
G133810 NA non-coding downstream 7095 16271634 ~ 16272207 (-)
G133720 NA non-coding downstream 118862 16159864 ~ 16160440 (-)
G133697 NA non-coding downstream 154565 16120357 ~ 16124737 (-)
G133698 LOC108265827,LOC108430339 non-coding downstream 161079 16116764 ~ 16118223 (-)
G133676 NA non-coding downstream 234720 16044262 ~ 16044582 (-)
G133914 NA non-coding upstream 159743 16448493 ~ 16448798 (-)
G133915 NA non-coding upstream 160122 16448872 ~ 16449270 (-)
G133916 NA non-coding upstream 160976 16449726 ~ 16450486 (-)
G134122 NA non-coding upstream 407186 16695936 ~ 16696673 (-)
G134211 NA non-coding upstream 560477 16849227 ~ 16849490 (-)
rnf165b rnf165,rnf165b,LOC108265796,LOC108430336,LOC107726876,LOC107569673 other downstream 180055 16085069 ~ 16099247 (-)
ccl27a NA other downstream 326623 15950262 ~ 15952679 (-)
LOC113532496 NA other downstream 1099106 15177787 ~ 15180196 (-)
sema6a sema6a,LOC107661172,LOC107663594,LOC106585847 other downstream 1216080 15001347 ~ 15063222 (-)
ccser1 ccser1 other downstream 1459574 14742482 ~ 14819728 (-)
ikbkb ikbkb other upstream 1759998 18048748 ~ 18084489 (-)
dynll1 dynll1,LOC103397138,LOC107559583 other upstream 1964835 18253585 ~ 18262218 (-)
ndufa4l2a LOC108434410,LOC108265249,LOC107678808,LOC107571901,LOC103362772 other upstream 3407648 19696398 ~ 19698530 (-)
LOC113533329 LOC108265714 other upstream 3684814 19973564 ~ 20005390 (-)
G135737 NA other upstream 3751547 20040297 ~ 20040688 (-)

Expression


Co-expression Network