G133698 (LOC108265827,LOC108430339)


Basic Information

Item Value
gene id G133698
gene name LOC108265827,LOC108430339
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 16116764 ~ 16118223 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU157950
TTCTCACTTGGCATCTCTACGTCGAAGGTAATCAGGCCTTCGTCATGCTCAGGACTGTGGGGTCTTGGAGGACTATTACAGGAGGACCCACTGGGGCTGGATTCATGCTGGGCATCCAGCAGGATCTTTTCCATGTCTCCATTATGGATTGAGGAGGATGAGGGGACATGCTCAAGTCCTCCGGCCAGGTTCTCCTCCTCTACTTCCTGCACAGCCTGCAGGGGTTGTGGAGGCTCAGTCTCACCCTGGTTCCTATTGGCCACAGAGGCAGCCAGGGTTGGGATCAGCTGCTGCCTCCCAGACGCCATGTTCCCATTCAATTCCAACTCCACCCAGGAC

Function

NR:

description
PREDICTED: BCL2/adenovirus E1B 19 kDa protein-interacting protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU157950 True 339 lncRNA 0.56 2 16116764 16118223

Neighbor

gene id symbol gene type direction distance location
avp LOC108265942 coding downstream 94860 16019749 ~ 16021904 (-)
LOC117597775 fabp1,LOC103043953,LOC108430333 coding downstream 98059 16017259 ~ 16018705 (-)
LOC113527457 fabp1,LOC108430333 coding downstream 104103 16011028 ~ 16012661 (-)
LOC117597774 fabp1,LOC108430333 coding downstream 111709 16003314 ~ 16005055 (-)
lzts3b lzts3,LOC108265122 coding downstream 124776 15980165 ~ 15991988 (-)
adra1aa LOC108264882,LOC108430341,LOC107714574 coding upstream 68467 16186690 ~ 16200532 (-)
LOC113524473 LOC108265577 coding upstream 161079 16279302 ~ 16288750 (-)
tmem127 tmem127,LOC107552193,LOC107713035,LOC106579884,LOC106585551 coding upstream 170835 16289058 ~ 16293702 (-)
ufd1l ufd1l coding upstream 183984 16302207 ~ 16305565 (-)
cldn5a cldn5,LOC107670982 coding upstream 205417 16323640 ~ 16325725 (-)
G133676 NA non-coding downstream 72182 16044262 ~ 16044582 (-)
G133663 NA non-coding downstream 103213 16005758 ~ 16013551 (-)
G133664 smyd1b non-coding downstream 108437 15999008 ~ 16008327 (-)
G133665 NA non-coding downstream 115272 16000832 ~ 16001492 (-)
G133584 NA non-coding downstream 194680 15921276 ~ 15922084 (-)
G133697 NA non-coding upstream 2134 16120357 ~ 16124737 (-)
G133720 NA non-coding upstream 41641 16159864 ~ 16160440 (-)
G133810 NA non-coding upstream 153411 16271634 ~ 16272207 (-)
G133914 NA non-coding upstream 330270 16448493 ~ 16448798 (-)
G133915 NA non-coding upstream 330649 16448872 ~ 16449270 (-)
rnf165b rnf165,rnf165b,LOC108265796,LOC108430336,LOC107726876,LOC107569673 other downstream 17517 16085069 ~ 16099247 (-)
ccl27a NA other downstream 164085 15950262 ~ 15952679 (-)
LOC113532496 NA other downstream 936568 15177787 ~ 15180196 (-)
sema6a sema6a,LOC107661172,LOC107663594,LOC106585847 other downstream 1053542 15001347 ~ 15063222 (-)
ccser1 ccser1 other downstream 1297036 14742482 ~ 14819728 (-)
ikbkb ikbkb other upstream 1930525 18048748 ~ 18084489 (-)
dynll1 dynll1,LOC103397138,LOC107559583 other upstream 2135362 18253585 ~ 18262218 (-)
ndufa4l2a LOC108434410,LOC108265249,LOC107678808,LOC107571901,LOC103362772 other upstream 3578175 19696398 ~ 19698530 (-)
LOC113533329 LOC108265714 other upstream 3855341 19973564 ~ 20005390 (-)
G135737 NA other upstream 3922074 20040297 ~ 20040688 (-)

Expression


Co-expression Network