G133664 (smyd1b)


Basic Information

Item Value
gene id G133664
gene name smyd1b
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 15999008 ~ 16008327 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU157912
CCTTAACTCCATCTACTACTGCACCAGCCATCTTCAGGTcatcttttgttttgttggtgCAGTGATCACAGGTGCAGTCAAAGAAGTATTGCTGCTTAAGCATGCGTTTGCGGTCCTCAGACAGATTCAGGTAGTCCACATATGCCACGGTCAATTCCTCCCCCACACTGATCTTACCCAGGGCACGTAGCTCAATTCTGAGACAAGAAACGAATCAGGTGAGATCCAAAAGCTATTTCTGCAAAAGTGCATATCTTGGAGTGGCTTTTAGTCCTGCTTTCAGCCGTCCTCTTGTCATTACAGATGAAAGTGTTAAATCTCTCACAGTTCAGTATCAGTCATCAATGCACACAGCTTATCCCATAtaccaggggttctcaaacattttgcagccagggacccctataactgtaaaataaaaaaattaaaagttccGCTGATGCCCTCAATAcagatttattgtattttttttaggtATATAATCTAGCCTTTCAAATATTGGtttcattgtttaaatgtgcacaataatattttggttatttattcaAGCCATTATTGAagagcttttttctttctgaacttttttgctcaaagaacacatttttcttAAGATTGCCATAAGTCTAAGTTGACATTGTTTACAGGCACATAGAAACAGGCAAATAACTATCATAActcaataatatataatgaaaacTTTGatcattccatttttttgtggTGATTTctacatctataacaaaataaataatgccaGATCCCCTGGCTCTGCTTCATGGACCCTTGAGGGTCCCCAgaccccattttgagaaccatggcTATATGCACTGTCATTCAGTGAAGTTCTCCAGATATtttctacagtaaaatacaaaatttcaaACAGCAGAGATGTCAGTTCTGCATGTCAATGAAATTTGTGTATTGATCATATACAATGTGTGACTTTGATATGAAAGTAGTTGTAAGTAGACATAAGGAGTAGCCTTCAGCTACTGTGAAAGAAGTAATGAAACATATAGAAATGCAGAAAGGATGCTACAGTAACAATAGTAACAAAGGATGAAGACAGGAGACAAAATGTGTAGTTTTGCAAAAAAGCCAAGACATCCACGTGTTGGCAAAATCTGGAATTAAGTGATGGTTAAGAGCATGATGGAAACAGATGATGGAAAAACGGACCAACCACCCAACAGCACTAGCCATCTtggttaaaacaaaataaaaaaagcattacTAGCTTTGAAAGCTGGGTTAATACAAAATCAATTGGATATAACCTAGAAGTACCTATTTGTGTTAAACTGTACTTTCAACAAATCAGTTACCATTTAGGCTAATCCTGAGCTGAAAATTGAAGCGTTTTCATTTTATGCTGTTGTTGGTTACTTGAAGATAGCTGCATTTGGGTAGCTGATCATCATATAGTGTGATTAAGTATGTGATAGTGAACAGAAGATAACAAGAAACGAAGAACTTGTCCGATTAATTGTGGCCAAG
>TU157913
CCTTAACTCCATCTACTACTGCACCAGCCATCTTCAGGTcatcttttgttttgttggtgCAGTGATCACAGGTGCAGTCAAAGAAGTATTGCTGCTTAAGCATGCGTTTGCGGTCCTCAGACAGATTCAGGTAGTCCACATATGCCACGGTCAATTCCTCCCCCACACTGATCTTACCCAGGGCACGTAGCTCAATTCTGAGACAAGAAACGAATCAGGTGAGATCCAAAAGCTATTTCTGCAAAAGTGCATATCTTGGAGTGGCTTTTAGTCCTGCTTTCAGCCGTCCTCTTGTCATTACAGATGAAAGTGTTAAATCTCTCACAGTTCAGTATCAGTCATCAATGCACACAGCTTATCCCATAtaccaggggttctcaaacattttgcagccagggacccctataactgtaaaataaaaaaattaaaagttccGCTGATGCCCTCAATAcagatttattgtattttttttaggtATATAATCTAGCCTTTCAAATATTGGtttcattgtttaaatgtgcacaataatattttggttatttattcaAGCCATTATTGAagagcttttttctttctgaacttttttgctcaaagaacacatttttcttAAGATTGCCATAAGTCTAAGTTGACATTGTTTACAGGCACATAGAAACAGGCAAATAACTATCATAActcaataatatataatgaaaacTTTGatcattccatttttttgtggTGATTTctacatctataacaaaataaataatgccaGATCCCCTGGCTCTGCTTCATGGACCCTTGAGGGTCCCCAgaccccattttgagaaccatggcTATATGCACTGTCATTCAGTGAAGTTCTCCAGATATtttctacagtaaaatacaaaatttcaaACAGCAGAGATGTCAGTTCTGCATGTCAATGAAATTTGTGTATTGATCATATACAATGTGTGACTTTGATATGAAAGTAGTTGTAAGTAGACATAAGGAGTAGCCTTCAGCTACTGTGAAAGAAGTAATGAAACATATAGAAATGCAGAAAGGATGCTACAGTAACAATAGTAACAAAGGATGAAGACAGGAGACAAAATGTGTAGTTTTGCAAAAAAGCCAAGACATCCACGTGTTGGCAAAATCTGGAATTAAGTGATGGTTAAGAGCATGATGGAAACAGATGATGGAAAAACGGACCAACCACCCAACAGCACTAGCCATCTtggttaaaacaaaataaaaaaagcattacTAGCTTTGAAAGCTGGGTTAATACAAAATCAATTGGATATAACCTAGAAGTACCTATTTGTGTTAAACTGTACTTTCAACAAATCAGTTACCATTTAGGCTAATCCTGAGCTGAAAATTGAAGCGTTTTCATTTTATGCTGTTGTTGGTTACTTGAAGATAGCTGCATTTGGGTAGCTGATCATCATATAGTGTGATTAAGTATGTGATAGTGAACAGAAGATAACAAGAAACGAAGAACTTGTCCGATTAATTGTGGCCAAG

Function

symbol description
smyd1b Enables histone methyltransferase activity (H3-K4 specific) and myosin binding activity. Acts upstream of or within heart contraction; histone H3-K4 methylation; and muscle cell development. Located in M band. Is expressed in cardiovascular system; musculature system; segmental plate; somite; and tail bud. Orthologous to human SMYD1 (SET and MYND domain containing 1).

NR:

description
SET and MYND domain-containing protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU157912 True 1500 lncRNA 0.37 2 15999008 16008327
TU157913 False 1500 lncRNA 0.37 2 15999008 16008327

Neighbor

gene id symbol gene type direction distance location
lzts3b lzts3,LOC108265122 coding downstream 7020 15980165 ~ 15991988 (-)
sfr1 NA coding downstream 22207 15972632 ~ 15976801 (-)
ubox5 ubox5 coding downstream 30329 15964657 ~ 15968679 (-)
slc35d2 slc35d2 coding downstream 53021 15930317 ~ 15945987 (-)
fbxl17 fbxl17,LOC102776382,LOC107570989 coding downstream 99560 15676192 ~ 15899448 (-)
LOC113527457 fabp1,LOC108430333 coding upstream 2701 16011028 ~ 16012661 (-)
LOC117597775 fabp1,LOC103043953,LOC108430333 coding upstream 8932 16017259 ~ 16018705 (-)
avp LOC108265942 coding upstream 11422 16019749 ~ 16021904 (-)
adra1aa LOC108264882,LOC108430341,LOC107714574 coding upstream 178363 16186690 ~ 16200532 (-)
LOC113524473 LOC108265577 coding upstream 270975 16279302 ~ 16288750 (-)
G133584 NA non-coding downstream 76924 15921276 ~ 15922084 (-)
G133580 NA non-coding downstream 92406 15906282 ~ 15906602 (-)
G133576 NA non-coding downstream 93040 15904862 ~ 15905968 (-)
G133573 NA non-coding downstream 96699 15854000 ~ 15902309 (-)
G133568 NA non-coding downstream 190577 15780296 ~ 15808431 (-)
G133676 NA non-coding upstream 35935 16044262 ~ 16044582 (-)
G133698 LOC108265827,LOC108430339 non-coding upstream 108437 16116764 ~ 16118223 (-)
G133697 NA non-coding upstream 112030 16120357 ~ 16124737 (-)
G133720 NA non-coding upstream 151537 16159864 ~ 16160440 (-)
G133810 NA non-coding upstream 263307 16271634 ~ 16272207 (-)
ccl27a NA other downstream 46329 15950262 ~ 15952679 (-)
LOC113532496 NA other downstream 818812 15177787 ~ 15180196 (-)
sema6a sema6a,LOC107661172,LOC107663594,LOC106585847 other downstream 935786 15001347 ~ 15063222 (-)
ccser1 ccser1 other downstream 1179280 14742482 ~ 14819728 (-)
grid2 grid2,LOC107751431,LOC107594506,LOC107711862,LOC107669587 other downstream 1274325 14330361 ~ 14724683 (-)
rnf165b rnf165,rnf165b,LOC108265796,LOC108430336,LOC107726876,LOC107569673 other upstream 76742 16085069 ~ 16099247 (-)
ikbkb ikbkb other upstream 2040421 18048748 ~ 18084489 (-)
dynll1 dynll1,LOC103397138,LOC107559583 other upstream 2245258 18253585 ~ 18262218 (-)
ndufa4l2a LOC108434410,LOC108265249,LOC107678808,LOC107571901,LOC103362772 other upstream 3688071 19696398 ~ 19698530 (-)
LOC113533329 LOC108265714 other upstream 3965237 19973564 ~ 20005390 (-)

Expression


Co-expression Network