G133810


Basic Information

Item Value
gene id G133810
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 16271634 ~ 16272207 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU158075
caggaatattttaaatataaaatagacTTCTTTAAAACCTGCTACTCAAAAACAATGTCTTGGcaaaatatgatatatatatatataaaacaggtAAATTCTTGACAAAATACTAtatattacaaaacatttacaACAGCTAGTTCACATTGACATAAAGGCTTGAATGTAAAAACTGCTGCATGCTATCATCTTCAGTCACATATATACACAACTGTAAATTAATGTCTTAGTGTGaaagcaaaatatttatatgaaaaaatCTCTGGCACACATGCTTCATCACAGTAGTCaaaaactgtacaaataaaCTGTGGCTTATTGAGCAGGGTGGCATAATACAACAGACTTCATTAAGACAAAGATGACAAGAATCTTACAAACTCATAAGGCACTGAGGGAGtcataaaataatgacatttatcTGTtctcaataattaataatattaattaactaCAATTTGATGACTGATACTCcacaaatgcaaaataacaTCAATGAAGTACAAAGAAACATGCTGAAAGCCCCAATTAGGAAACACTGTAATCTGAAGAGCTGAATTTGGGTATTGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU158075 True 574 lncRNA 0.30 1 16271634 16272207

Neighbor

gene id symbol gene type direction distance location
adra1aa LOC108264882,LOC108430341,LOC107714574 coding downstream 71102 16186690 ~ 16200532 (-)
avp LOC108265942 coding downstream 249730 16019749 ~ 16021904 (-)
LOC117597775 fabp1,LOC103043953,LOC108430333 coding downstream 252929 16017259 ~ 16018705 (-)
LOC113527457 fabp1,LOC108430333 coding downstream 258973 16011028 ~ 16012661 (-)
LOC117597774 fabp1,LOC108430333 coding downstream 266579 16003314 ~ 16005055 (-)
LOC113524473 LOC108265577 coding upstream 7095 16279302 ~ 16288750 (-)
tmem127 tmem127,LOC107552193,LOC107713035,LOC106579884,LOC106585551 coding upstream 16851 16289058 ~ 16293702 (-)
ufd1l ufd1l coding upstream 30000 16302207 ~ 16305565 (-)
cldn5a cldn5,LOC107670982 coding upstream 51433 16323640 ~ 16325725 (-)
srrd srrd coding upstream 146835 16419042 ~ 16423586 (-)
G133720 NA non-coding downstream 111194 16159864 ~ 16160440 (-)
G133697 NA non-coding downstream 146897 16120357 ~ 16124737 (-)
G133698 LOC108265827,LOC108430339 non-coding downstream 153411 16116764 ~ 16118223 (-)
G133676 NA non-coding downstream 227052 16044262 ~ 16044582 (-)
G133663 NA non-coding downstream 258083 16005758 ~ 16013551 (-)
G133914 NA non-coding upstream 176286 16448493 ~ 16448798 (-)
G133915 NA non-coding upstream 176665 16448872 ~ 16449270 (-)
G133916 NA non-coding upstream 177519 16449726 ~ 16450486 (-)
G134122 NA non-coding upstream 423729 16695936 ~ 16696673 (-)
G134211 NA non-coding upstream 577020 16849227 ~ 16849490 (-)
rnf165b rnf165,rnf165b,LOC108265796,LOC108430336,LOC107726876,LOC107569673 other downstream 172387 16085069 ~ 16099247 (-)
ccl27a NA other downstream 318955 15950262 ~ 15952679 (-)
LOC113532496 NA other downstream 1091438 15177787 ~ 15180196 (-)
sema6a sema6a,LOC107661172,LOC107663594,LOC106585847 other downstream 1208412 15001347 ~ 15063222 (-)
ccser1 ccser1 other downstream 1451906 14742482 ~ 14819728 (-)
ikbkb ikbkb other upstream 1776541 18048748 ~ 18084489 (-)
dynll1 dynll1,LOC103397138,LOC107559583 other upstream 1981378 18253585 ~ 18262218 (-)
ndufa4l2a LOC108434410,LOC108265249,LOC107678808,LOC107571901,LOC103362772 other upstream 3424191 19696398 ~ 19698530 (-)
LOC113533329 LOC108265714 other upstream 3701357 19973564 ~ 20005390 (-)
G135737 NA other upstream 3768090 20040297 ~ 20040688 (-)

Expression


Co-expression Network