LOC113532496


Basic Information

Item Value
gene id LOC113532496
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 15177787 ~ 15180196 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU157316
CAGCTAAGAAGTCAGTGCGCGAAAGGTGAAAAGTGTAGTTTTGTGGCTGTAACTGACTTCGGGAAGGTGAATTATGGCGAAACCGAAGAGGAGAACAAAATACTCGTTCCAGGAAGTGCTGGAAGAATGTCCTCGGCGTGAAAGCGACGAGTGTGGGGATGAAGTTTCAGGAGTAAATAGTGATGAATCATATACTGACTCTGAGGCAGAAGCAAAGTTTGTATAGGGAGGAGGCATTACTCTCGACAAGCAATTATCTGATGTAGAATCAGACATGGATTGGAAGCCGGATGCTTCTCCCCCACTCAGCAAGCGGTCACACAGAGTGGAGCAGCAGGACATCACCTCATGAGTAGAGGAGCTCCATCCCCCAACTCCCCAGAGAGCTTCTGCCAGCAGGGGAAGACCAAGAGGCAGAGGACGgtggagagggaaagggagaggCAGCAGCACTCAAGCCTGGATGTCAACAAGCACATCTGGAGAAACATGGAATGATGTTGACGTTCCAGATATAACACCACCACAGCCCACCTTCAGACCCACCGATTCATACGTACAGCTACGTACACAGCCCTGCAGCTcctccaacttttttttttttttttttttttttttttttttttatactgactGTCTTTTACAGACATTGATTCAAAACACCAATGACTTTGTCTTGACTCACTACTCAACACCCACCAACTCATGGACTGATCTGACATTGCAGgacattcattcatgttcatggTCATGTACATGGGTGTAGTAAAACTCTCTGTATTAACTGATTACTGGCGAGGGGGTAAACTGTACAGCTTGCCGTTCCCAAAAAAAGGTAATGACTGTTAAGAAGTTCCTCACAATCTGCCAGTCCATTCAGCTCAGTAGCTCGGTAGATGATGCTGCTAACGAGTAAAGGAGAGGCACAACAGCCTCTGATCGTCTTTGCAACATAAAGCCACTCTACCAGGAGATTAGGGATGCATGCAAATGGAACTATCACCCTGGCCAGAAAATTGCCATTGACGAGTGAATGGTTGCCTCCAAAGCCCGCAGTGGGCTCAAACAGTATATGAAAAATAAGCCTGTACACTGGGGATATAAACTCTTCGATCTGGCGGACTCCAGAAACGGTTACACGTGGGACTTTTTTTGTCTACGAGGGAAAGCTGCAGGCAAACAGTGGCAAGAGGCTCAGTTATGAGTCGGTGATGGAGCTAACTGATACACGGTTGCTGGTCACCGAATACAAGCTCTTTGTTGACAATTTTTACACAAGTCCCACCATTTTCCGCAACCTTCAGAAAAGGGTCTGGGCATGCGGAACCATCCGCACAAACAGAATTGGATTCCTGAAAACGAAAGTCAACAGTCTGGACTCAAACTCTCCCCGTGGCAGCATACGCTGGAACAGGAACAACTCCCTCCTCTTTGTCCAGTAGCGAGACACAAGCGACATCTTCCTGTGTTCAACACTCCACACGGCACATGCGGAGGACATAGCGCAAAGCAGGGTCAAAGGTGCAGATGAGACCTGGGCATTGAAGGACATCCCAGTTCCACCACTGTGTACCAACCAGTGCATGGGTGGAGTGGACCTCTCTGACACCCTGATGGGGTACTGTAAAGTCATCCAGAAGACCCAGAAGTAGTACAAGTCGTTCTTTTATCATTTCATGGACATCGTGATTGTGAACACCTTCCTCCTCCACATAGACATTGCAAAAGGTAAAAGAGGCACCAGAAGGCATTCAGAGAGACCCTTGCTGAGTAGCTGGCAGACTTGGGATCTCACTCCACAGCCAGACCCGTACCTCCTGCTCCACAGAGAGCACATCACAGGCCAGCGTAGATCAGTGGACACAGCACCACTGCTACAATGACTGGCATGTTGCCAAAAACCTGTAAAGGGTATaattgtatgtaaatatgttgTGTAAAAAAGTATGCAAatagttttgtgtgtttcttcttaTATAAACTGCTTTTCCACCA
>XR_003403349.2
ACTGGCACATCATATAGCCaatgaaattctgaaaaacATGACATGCCGCTTTAGTGGGACGTTTCAACAGTACAGCTAAGAAGTCAGTGCGCGAAAGGTGAAAAGTGTAGTTTTGTGGCTGTAACTGACTTCGGGAAGGTGAATTATGGCGAAACCGAAGAGGAGAACAAAATACTCGTTCCAGGAAGTGCTGGAAGAATGTCCTCGGCGTGAAAGCGACGAGTGTGGGGATGAAGTTTCAGGAGTAAATAGTGATGAATCATATACTGACTCTGAGGCAGAAGCAAAGTTTGTATAGGGAGGAGGCATTACTCTCGACAAGCAATTATCTGATGTAGAATCAGACATGGATTGGAAGCCGGATGCTTCTCCCCCACTCAGCAAGCGGTCACACAGAGTGGAGCAGCAGGACATCACCTCATGAGTAGAGGAGCTCCATCCCCCAACTCCCCAGAGAGCTTCTGCCAGCAGGGGAAGACCAAGAGGCAGAGGACGgtggagagggaaagggagaggCAGCAGCACTCAAGCCTGGATGTCAACAAGCACATCTGGAGAAACATGGAATGATGTTGACGTTCCAGATATAACACCACCACAGCCCACCTTCAGACCCACCGATTCATACGTACAGCTACGTACACAGCCCTGCAGCTcctccaacttttttttttttttttttttttttttttttttttatactgactGTCTTTTACAGACATTGATTCAAAACACCAATGACTTTGTCTTGACTCACTACTCAACACCCACCAACTCATGGACTGATCTGACATTGCAGgacattcattcatgttcatggTCATGTACATGGGTGTAGTAAAACTCTCTGTATTAACTGATTACTGGCGAGGGGGTAAACTGTACAGCTTGCCGTTCCCAAAAAAAGGTAATGACTGTTAAGAAGTTCCTCACAATCTGCCAGTCCATTCAGCTCAGTAGCTCGGTAGATGATGCTGCTAACGAGTAAAGGAGAGGCACAACAGCCTCTGATCGTCTTTGCAACATAAAGCCACTCTACCAGGAGATTAGGGATGCATGCAAATGGAACTATCACCCTGGCCAGAAAATTGCCATTGACGAGTGAATGGTTGCCTCCAAAGCCCGCAGTGGGCTCAAACAGTATATGAAAAATAAGCCTGTACACTGGGGATATAAACTCTTCGATCTGGCGGACTCCAGAAACGGTTACACGTGGGACTTTTTTTGTCTACGAGGGAAAGCTGCAGGCAAACAGTGGCAAGAGGCTCAGTTATGAGTCGGTGATGGAGCTAACTGATACACGGTTGCTGGTCACCGAATACAAGCTCTTTGTTGACAATTTTTACACAAGTCCCACCATTTTCCGCAACCTTCAGAAAAGGGTCTGGGCATGCGGAACCATCCGCACAAACAGAATTGGATTCCTGAAAACGAAAGTCAACAGTCTGGACTCAAACTCTCCCCGTGGCAGCATACGCTGGAACAGGAACAACTCCCTCCTCTTTGTCCAGTAGCGAGACACAAGCGACATCTTCCTGTGTTCAACACTCCACACGGCACATGCGGAGGACATAGCGCAAAGCAGGGTCAAAGGTGCAGATGAGACCTGGGCATTGAAGGACATCCCAGTTCCACCACTGTGTACCAACCAGTGCATGGGTGGAGTGGACCTCTCTGACACCCTGATGGGGTACTGTAAAGTCATCCAGAAGACCCAGAAGTAGTACAAGTCGTTCTTTTATCATTTCATGGACATCGTGATTGTGAACACCTTCCTCCTCCACATAGACATTGCAAAAGGTAAAAGAGGCACCAGAAGGCATTCAGAGAGACCCTTGCTGAGTAGCTGGCAGACTTGGGATCTCACTCCACAGCCAGACCCGTACCTCCTGCTCCACAGAGAGCACATCACAGGCCAGCGTAGATCAGTGGACACAGCACCACTGCTACAATGACTGGCATGTTGCCAAAAACCTGTAAAGGGTATaattgtatgtaaatatgttgTGTAAAAAAGTATGCAAatagttttgtgtgtttcttcttaTATAAACTGCTTTTCCACCATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU157316 False 1995 TUCP 0.47 3 15177789 15180124
XR_003403349.2 True 2069 lncRNA 0.47 3 15177787 15180196

Neighbor

gene id symbol gene type direction distance location
hsd17b4 hsd17b4 coding downstream 45643 15112879 ~ 15132144 (-)
cdo1 cdo1 coding downstream 262151 14909870 ~ 14915636 (-)
tmed7 LOC108265697,LOC102200599,LOC101168626,LOC100701005,LOC107084449 coding downstream 279042 14888315 ~ 14898745 (-)
fem1c fem1c,LOC106580179,LOC108265699,LOC107728259 coding downstream 289985 14883568 ~ 14887802 (-)
LOC113529758 ccdc112,LOC108266012,LOC108265700 coding downstream 301869 14866934 ~ 14875918 (-)
LOC113536668 ppic,LOC107713556,LOC107704600,LOC107726227,LOC107566397,LOC100333141 coding upstream 50328 15230524 ~ 15233880 (-)
LOC113533919 cep120,zgc:163014,LOC107712640 coding upstream 98798 15278994 ~ 15299126 (-)
znf608 znf608 coding upstream 123616 15303812 ~ 15311293 (-)
LOC113529044 LOC108265961,LOC108442001,LOC107697601,LOC107712558,LOC105890695,LOC106587038,LOC104934760 coding upstream 132776 15312972 ~ 15332694 (-)
trnad-guc_2 NA coding upstream 155400 15335596 ~ 15335667 (-)
G133184 NA non-coding downstream 44729 15132852 ~ 15133058 (-)
G133141 NA non-coding downstream 168084 15006579 ~ 15009703 (-)
G132570 NA non-coding downstream 917148 14260285 ~ 14260639 (-)
G132568 NA non-coding downstream 918050 14259517 ~ 14259737 (-)
G132559 NA non-coding downstream 941751 14235555 ~ 14236036 (-)
G133221 NA non-coding upstream 29271 15209467 ~ 15210863 (-)
G133320 NA non-coding upstream 169420 15349616 ~ 15357434 (-)
G133321 nudt12 non-coding upstream 172189 15352385 ~ 15359681 (-)
G133348 NA non-coding upstream 235614 15415810 ~ 15416040 (-)
G133356 NA non-coding upstream 244734 15424930 ~ 15425207 (-)
sema6a sema6a,LOC107661172,LOC107663594,LOC106585847 other downstream 114565 15001347 ~ 15063222 (-)
ccser1 ccser1 other downstream 358059 14742482 ~ 14819728 (-)
grid2 grid2,LOC107751431,LOC107594506,LOC107711862,LOC107669587 other downstream 453104 14330361 ~ 14724683 (-)
atoh1a atoh1 other downstream 853370 14321909 ~ 14324417 (-)
hsd17b3 hsd17b3 other downstream 992850 14178891 ~ 14184937 (-)
ccl27a NA other upstream 770066 15950262 ~ 15952679 (-)
rnf165b rnf165,rnf165b,LOC108265796,LOC108430336,LOC107726876,LOC107569673 other upstream 904873 16085069 ~ 16099247 (-)
ikbkb ikbkb other upstream 2868552 18048748 ~ 18084489 (-)
dynll1 dynll1,LOC103397138,LOC107559583 other upstream 3073389 18253585 ~ 18262218 (-)
ndufa4l2a LOC108434410,LOC108265249,LOC107678808,LOC107571901,LOC103362772 other upstream 4516202 19696398 ~ 19698530 (-)

Expression


Co-expression Network