G133141


Basic Information

Item Value
gene id G133141
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 15006579 ~ 15009703 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU157239
TTTCATTATGGAATGCTCACAATTTTATAGCACATTTGACACTGTTTTACAACTAGGTCTTCCATCACACTGACAGTTATGGAGAGAGGCGGGTTTAGACTAGATCACTATTTTCAGCTACTCGTATCCTAATGATGTTCATATTAGTGGCTTTCACCTTCACTGTAATTTAAGGCTGCATTTATTCAGGGTAGAAATTTGGCTTTAGATTTAACCCAGTTCTGCTTCTCCTCGTCCGCATTAACCCATGGacatttacttttaatgtttacGCCCTGATTCCTTActgatttctttttcatataGACTTTGTATGATTTATCATATTTACAGATCTCATATGTCAGGGTTACTTTTTATACATCtaagaaatgacattttataatattgGTTATGATTAGAATGTTAGATGTATTCATGTAGACAGGAGGCAATATAAATGCCAGCTTGACATTTTCTAAAAGGGGAATGTGCACTTGTAAACAAAGTGACGTGTGCGTCAGAGATGTAAGGAAAAGATGTTCAGTGTGGCATATGCCAGGCTTAAACCTTAACTATTATCCCCCTGGATGTGCACTGAGCAAGCATTTGATGGCCTCAGTCAGAAGATTTAGAAGGCAAAGCTTTTTAAATCACTCTGCAGATGTAGAGATCTAGAGCATACACATAATCAGCCATTCAGGACACTGAGAGCAAATGCACCTGCCACAGCATCCAGTTTAATGTTGAAGTTAAAGGTTTAGACAATAACTTTATGTTGCAGAAACTGACTGAATTTAGTggaagaaataagaaatgaatgaCAACTGAAGTGAATGAACTGCCATCAGTGCTCCCAGAAAACATGTAAACCACATTAAAGGATTTATTAAATGCAAAAGACattaatatagtatagtgtTATTTTTTGAGGGAATTATggaacatgtttattttatgatggACCTGAGACATAGTAGCTTTGGAACACAATATCAGTCTTTTGCAGTGTATAGTATGTATGCCAGAGGTGGGAACAGGTCCGTGGTCTTAACACTCAAATCCAAGTCAAGTCCCAAGTAAAAACAGACGAGTCCAAAGTGAAGTGCTATGAACAAGTCAGAATGAGTTCCTCGTCTAAATTAATGACATGCCAAACTCTATCATCAGCCAAGTAACTGTAgtgtattacatttacataaataatgaaCCCCTGGAAAACAGACCAGATCAAAAACCATGAATAAGAACACTAATACAAACAGTGAGCTGAGCAGGTACTTCACAACGTGTGAGTGTATGGCGTGTGCTTATATATGTGAATGGTAATTGTGTCCAGGTGTGTGATCAGTATGCTGgtgactgtgtgaatgtgacAATAATGAGACGcgtgggtgttgtagtccttggTGGCCATATTTGTAAGCCACGGTATGTTCTGGGCGATGGAGCTCAGCACAGATTATGGCACTGACATGattatagtaaatatttttacctGACGAAATgaagttaatgtcatgttttcatgtgaaaagtaacttttattacttatctaaaactgttagaagatgattttttttaaagcaaatacataattttgcctgaaaacatcattcaatcttTAGAAGTTCAATCTTTATTGAACAAAGTTCTCAAAGTTAGCAATATTTGCCTAACCGGAGTCCATTCTATTGATGTATAGCATAtagtcattggctggatgagagaagtaGAGACCTTGAAGATTTATAATGAGTTAtttgaagtaaataaaaatgtaagcagTTAAGTGTAAGTTTTTTCCTTGGAAATGTAACTACGaatcaattcaatttcagtaatattcaagtacagtataaatatgccaaaataatacttaagtactGTAACAAAGTACTACTCAAGTATTGTCCATCTCGATCATGACCTTAGAGTTATAAGTTTCTATCTACCAATCTTTACCCAagtagaaccttataatactaatcACATACTAATGACTTTAAAATACAGCAATTATTTAAGGGTTCATGTCTAAGTTATTGGTGTTAAAGTCAATAAAAATAGtcgaaaattatttttattttggtcagTCTGAAGTCAGTAAATTTGTGATTTAAATCCATACCTCTGTTGTTTGCCCTATAGATTCAACTAAACTAGATAACTAGAACAGCAGTATtctttctctaaaaaaaaaggaggattACTGCAATTTGTGCTagtaacattaaacattagagAGCCCTTATCAAACATGGAGGATGTTAAAACAGACCCCCTGTTCACTGTGCAAACGTGCAAAAAGGAGCattccgagagagagagagagagagagagagagagagagtattcgATTATTTTGCAGAGAAGTAAACATATTAGAGATGCAGTGGCAGAACAGTTTCCATGCTGGTTGTTTGGCTAGGATGTCACTTTTCTCACATAAGAATCTGAACAGAATCAACAGGAACATTTGTCACTTGAACTGGAGCCCTCAATGGAGCTTCACACACCAACGTCAGTCAACACACATGTTCATGCTTCTGCAAGTCATTCCAAATCCTCCGTGAGCCGTTCACTGACCTACGTGTCTGACTGTGAGGTTAAATTGTCTTTCCAATCATCTTCTCCTTCAAATCAGACATCACCATTAACGACTGCCAAACTGTCTCCTCTTTCGAAACGGACCTCATGTACCTTTGAAGCCTCTTtagaaaaaatgactttttttctgtgtgaatATTTGTCACTTCTTCACACAGGATAGAGCGTAGTGAGAGGCTTTGGATTTGATTTAACTCACTCGAATGCAGCGAAGCATTTTCCAAGATACCTAATTTATCTGCGATTGGAGCCTCATGAATTTCAGATATGAGGATTCTCAGCTTGAGCTTTGTTTTTGTGACTACTTTTATGTCAACAACCCGTGCCGGAAAAGATTACATGAATAAGTTTTAGTTGGTGTGCATGAATTTTTAAAGAGTAGACTATTTGAGTATAATTAGTCATCACGATTACTTTTGCACTTAAAGCTATTTAGAGCACCCAGATGGAATCAAAAGAATttgttgaaagaaaaataaggtTTTAAATGTAAGCGGGATCTTGCAATCATTTGCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU157239 True 3105 lncRNA 0.36 2 15006579 15009703

Neighbor

gene id symbol gene type direction distance location
cdo1 cdo1 coding downstream 90943 14909870 ~ 14915636 (-)
tmed7 LOC108265697,LOC102200599,LOC101168626,LOC100701005,LOC107084449 coding downstream 107834 14888315 ~ 14898745 (-)
fem1c fem1c,LOC106580179,LOC108265699,LOC107728259 coding downstream 118777 14883568 ~ 14887802 (-)
LOC113529758 ccdc112,LOC108266012,LOC108265700 coding downstream 130661 14866934 ~ 14875918 (-)
pggt1b pggt1b coding downstream 142057 14847094 ~ 14864522 (-)
hsd17b4 hsd17b4 coding upstream 103176 15112879 ~ 15132144 (-)
LOC113536668 ppic,LOC107713556,LOC107704600,LOC107726227,LOC107566397,LOC100333141 coding upstream 220821 15230524 ~ 15233880 (-)
LOC113533919 cep120,zgc:163014,LOC107712640 coding upstream 269291 15278994 ~ 15299126 (-)
znf608 znf608 coding upstream 294109 15303812 ~ 15311293 (-)
LOC113529044 LOC108265961,LOC108442001,LOC107697601,LOC107712558,LOC105890695,LOC106587038,LOC104934760 coding upstream 303269 15312972 ~ 15332694 (-)
G132570 NA non-coding downstream 745940 14260285 ~ 14260639 (-)
G132568 NA non-coding downstream 746842 14259517 ~ 14259737 (-)
G132559 NA non-coding downstream 770543 14235555 ~ 14236036 (-)
G132557 NA non-coding downstream 771739 14234397 ~ 14234840 (-)
G132516 NA non-coding downstream 998111 13998466 ~ 14008468 (-)
G133184 NA non-coding upstream 123149 15132852 ~ 15133058 (-)
G133221 NA non-coding upstream 199764 15209467 ~ 15210863 (-)
G133320 NA non-coding upstream 339913 15349616 ~ 15357434 (-)
G133321 nudt12 non-coding upstream 342682 15352385 ~ 15359681 (-)
G133348 NA non-coding upstream 406107 15415810 ~ 15416040 (-)
ccser1 ccser1 other downstream 186851 14742482 ~ 14819728 (-)
grid2 grid2,LOC107751431,LOC107594506,LOC107711862,LOC107669587 other downstream 281896 14330361 ~ 14724683 (-)
atoh1a atoh1 other downstream 682162 14321909 ~ 14324417 (-)
hsd17b3 hsd17b3 other downstream 821642 14178891 ~ 14184937 (-)
fance fance,LOC107668098,LOC107549969 other downstream 1988263 13007509 ~ 13018316 (-)
LOC113532496 NA other upstream 168084 15177787 ~ 15180196 (-)
ccl27a NA other upstream 940559 15950262 ~ 15952679 (-)
rnf165b rnf165,rnf165b,LOC108265796,LOC108430336,LOC107726876,LOC107569673 other upstream 1075366 16085069 ~ 16099247 (-)
ikbkb ikbkb other upstream 3039045 18048748 ~ 18084489 (-)
dynll1 dynll1,LOC103397138,LOC107559583 other upstream 3243882 18253585 ~ 18262218 (-)

Expression


Co-expression Network