G133321 (nudt12)


Basic Information

Item Value
gene id G133321
gene name nudt12
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 15352385 ~ 15359681 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU157471
CTGCTTAGACCAAATCAAATGGATGTCCCACCTGCTTCATCTTCATTTAGCATTAGGAGCCTTGGCATTGGCCTTGTAAGGAAGAAGCTGTTTGAAGTTGTGACCTTAAGACTTTCTGTGGGATTGTTGTTGGTATTTAGAGCAAACCATGCAATGAGTCCATCCTCCTTTGACACCGGAGAAGAAGGTGAACATTCCTGCTTTTCTACTCCCAGAAAAATAACCACTGTGTCACTCTTTTCGATTACTTCTTTCACAGAGTCCTTTCCAAACCTGTATAGTTTTAACTTAGGTTGCTTCATTTCCTCCGGCTCTGTTGTAACAAAAGGGTCCAAGttataaaacacaatgaacaCTGTTTCAGGAGAAGACTGTTTAGCTGAAAGCCATTCCGAATCAGTCCTTTTATCACTCATTCTGTTGAGATATTCTCTACTGAAGTATGTTTCATTCTCTGTAGATTTATTGCTGGGTAGAACCCCTTGAAGTGTGACATCCCCACTGCTGGATAAAAAACGGGCAATGTGTCTGTGGCCCCAGAATTTTGCTATGTCATGAGCAGTTTGGCCTGACTTATTCACCAAATCTTTATTACAC

Function

symbol description
nudt12 Predicted to enable NADH pyrophosphatase activity. Predicted to be involved in NAD catabolic process; NADH metabolic process; and NADP catabolic process. Predicted to be active in cytosol and peroxisome. Orthologous to human NUDT12 (nudix hydrolase 12).

NR:

description
PREDICTED: peroxisomal NADH pyrophosphatase NUDT12 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU157471 True 597 lncRNA 0.41 2 15352385 15359681

Neighbor

gene id symbol gene type direction distance location
LOC113526253 LOC108265962 coding downstream 11716 15336107 ~ 15340669 (-)
trnad-guc_2 NA coding downstream 16718 15335596 ~ 15335667 (-)
LOC113529044 LOC108265961,LOC108442001,LOC107697601,LOC107712558,LOC105890695,LOC106587038,LOC104934760 coding downstream 19691 15312972 ~ 15332694 (-)
znf608 znf608 coding downstream 41092 15303812 ~ 15311293 (-)
LOC113533919 cep120,zgc:163014,LOC107712640 coding downstream 53259 15278994 ~ 15299126 (-)
LOC113525393 NA coding upstream 4586 15364267 ~ 15376090 (-)
zgc:101664 LOC108265953 coding upstream 17664 15377345 ~ 15378971 (-)
LOC113528824 NA coding upstream 25616 15385297 ~ 15386530 (-)
mfsd14bb LOC108265778,LOC108430319,LOC103035659,LOC106587031,LOC105890793 coding upstream 43548 15403229 ~ 15415450 (-)
efna5b efna5,LOC108265807,LOC108430322,LOC100702629,LOC103397673,LOC106585191 coding upstream 178198 15537879 ~ 15623188 (-)
G133221 NA non-coding downstream 141522 15209467 ~ 15210863 (-)
G133184 NA non-coding downstream 219327 15132852 ~ 15133058 (-)
G133141 NA non-coding downstream 342682 15006579 ~ 15009703 (-)
G132570 NA non-coding downstream 1091746 14260285 ~ 14260639 (-)
G132568 NA non-coding downstream 1092648 14259517 ~ 14259737 (-)
G133348 NA non-coding upstream 56129 15415810 ~ 15416040 (-)
G133356 NA non-coding upstream 65249 15424930 ~ 15425207 (-)
G133360 NA non-coding upstream 77304 15436985 ~ 15439670 (-)
LOC117597848 NA non-coding upstream 105563 15465244 ~ 15472266 (-)
G133552 NA non-coding upstream 215150 15574831 ~ 15627948 (-)
LOC113532496 NA other downstream 172189 15177787 ~ 15180196 (-)
sema6a sema6a,LOC107661172,LOC107663594,LOC106585847 other downstream 289163 15001347 ~ 15063222 (-)
ccser1 ccser1 other downstream 532657 14742482 ~ 14819728 (-)
grid2 grid2,LOC107751431,LOC107594506,LOC107711862,LOC107669587 other downstream 627702 14330361 ~ 14724683 (-)
atoh1a atoh1 other downstream 1027968 14321909 ~ 14324417 (-)
ccl27a NA other upstream 590581 15950262 ~ 15952679 (-)
rnf165b rnf165,rnf165b,LOC108265796,LOC108430336,LOC107726876,LOC107569673 other upstream 725388 16085069 ~ 16099247 (-)
ikbkb ikbkb other upstream 2689067 18048748 ~ 18084489 (-)
dynll1 dynll1,LOC103397138,LOC107559583 other upstream 2893904 18253585 ~ 18262218 (-)
ndufa4l2a LOC108434410,LOC108265249,LOC107678808,LOC107571901,LOC103362772 other upstream 4336717 19696398 ~ 19698530 (-)

Expression


Co-expression Network