LOC113526253 (LOC108265962)


Basic Information

Item Value
gene id LOC113526253
gene name LOC108265962
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 15336107 ~ 15340669 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026913132.2
GACCTCCCCACGGACTAAAATCTGAGAACACAGATGGGTCTTTGCAAATAACTTCATAATAACATCAAGGGAGAAGAATCATTTCAGACTTTTGGAGATGGAAAAACCTTTTAGCTGTGATGACTCGCTCCTCAGAAACAGGACCAATGCTGTCCATTGCAGACCAACATGTTCTGTTTTACCCAGTCAACAGAACGAGCATGTGTTACAATGTCACAATGCTGAAAATGGGAATGAGGAGAACTCaaggaaaataacaaaatcaaATGTGCCCATATCAATGGACACTCAGTCTGAAATCTTGGAAAGAAGAGGAAAACCAACACTACTAATTAGGTCCAAAACATTTGATCCCTCCTTTCTTTCATATGTCCAAAGTGACACTGAGTCAAAGACTGAAAGGAAAAAGCAACAGTGCTGCCATTTTCCTCGGACAAATACCCAATACCACAAAATTTTCAAAGACATTAGTGAGAATGAGCTGTTGAAACAAAGTTACACATGTGCATTGCAGAAAGATATTCTTTACCAAGGGAGACTTTTCGTGTCGGATAACTGGATTTGTTTCCACTCCAAAGTCTTTGGTAAAGACACCAAGATTGCCATTCCAGCTATATCTGTATCGGtaataaagaaaactaaaacTGCCATCTTAGTACCAAATGCACTGATTATTGCAACAGCACAAGAACGGtatgtttttgTGTCATTCCTGTCCCGAGACACTACATACAAGGTTTTGATGTCAGTGTGCTCCCATTTGGATGACAAGTGTTTGGGAAACAGTCCTATTCATTCCTCTGCAGATGGCAATTACACAGTGTCACCTTCCACACTTCCCATGAATTTCTCAGCAGATCTGTCAGATTTGGATGGCCCAGTGGTTCAAAGGAGACAAGAAATGGGATATAGCAGTAGCTCAGACTCTCCAGATTCACCAGAGTATGAGAAAATGccagAACACAAACGGAATGTTTATGAAAGTAAAACACTGAGACCAAGCTTGCTTAATGTTCTTCTGATGGTGTACCTATTTCTAGTCTGCATTTTGCTTTTGTCTTCATGTTACATGGCTTTCAAGATCATATCTTTGGAAGAGAGGCTGGACTCTCTAGGCTCTATGGctgaatttattcataatggAGATGAGTACAACAGCGCATACTCTGAGGATGCTTCTAGGGTCTACTCTGCTGTGTCCATTAACCTTGTGAAGCTTGAAAAGATAAAAAGAGGCCTACAGAGACTATTGGACAAAATCCAGTGACTTTAGATCATTCCTCAGATCTCAGTCACCACAAGGTACTGAGATCTTTATAGGGTGTACCGTTTATTGTTATTGCAAGTCATTGGCCAAGATAGGACTATAGAACATGGGCAATGTTTTCCTGGACataataaaagcacaaaataaagcTCCATTTTACTGCTAACAACCCCTGGATTATTAATCTTGGAATACCACCCCAGTGgcaattttgtttgttttttcctttgtaatgtttttctgtctctgaaaAGCATGGTAGAGGTGTGATGAAATTGTGTAACTCCACAAAAATGCTTTGTAAGATTTTGGTtgaaaccagaaaaaaatataattttgttcTTGCATCTGCTAGAGAAGCACAATGTTAGACCAAAGTGGGTTTGAAAATACCACTTCACCATCAAATCTCATATGTCTCACTTTTTGCTGAACCACTCCAACCATGTCAGTGCAGGCTCAGGTCTGATCACGACAATGGCAACTGTGTGGGAAAAAAGCATTCTGGCGCTATACTACTAATATATGCTTGGACTTGCTAGTAACTTGTAAAGTTAAAATGGTAGCTATATGAAGAACCGTAGATGccacaataaaatacattagtgCATCCACCTCTTTGGAAAAGGCCAGATTCAGTTATAATGCAATGCAAGTCTATGGAGAAATGCTAATGCCACCCTGATAAAATTGCCTGTAACTTATTTTTCCTTacaattttcacaaaatttgcTTCGTTCAAGACGTCATATGTTTTTGTACTATATCACAggttatgtaaatgtaaatatacctGCCATGTCAATATATTGATTGTGTCATGTCAACGCCAGAATCAGTGTCACACTACATCTCCGAGAACACAacacagcctacaaacatggccgccagaAACTACAACCCCCAGCAAACATTGACTCAGTCACGTTCACTGTCACCATTCTTCTAATCAtgcacacctggactcaatcatgAACCAGAccctaaatacacacacaaccccacAGTTAACTGCAAAATATATGTTTTGTGTCCTTGTTACTAGCGTTTACAAAGCCTTTAGATATTGTGAATCTGATGTTCTGGGTTTTGATTCTTGCCCTGCCTTTTCATGCTGTTTGCTAAtcacctgaccattgcctgtttcCTGTTCTGAGTTTGCCTCATGATTTGTATCTGTTTTGAAGCTGTCTAAATAAAGCTGTTTATACCTGC
>XM_026913142.2
GACCTCCCCACGGACTAAAATCTGAGAACACAGATGGGTCTTTGCAAATAACTTCATAATAACATCAAGGGAGAAGAATCATTTCAGACTTTTGGAGATGGAAAAACCTTTTAGCTGTGATGACTCGCTCCTCAGAAACAGGACCAATGCTGTCCATTGCAGACCAACATGTTCTGTTTTACCCAGTCAACAGAACGAGCATGTGTTACAATGTCACAATGCTGAAAATGGGAATGAGGAGAACTCaaggaaaataacaaaatcaaATGTGCCCATATCAATGGACACTCAGTCTGAAATCTTGGAAAGAAGAGGAAAACCAACACTACTAATTAGGTCCAAAACATTTGATCCCTCCTTTCTTTCATATGTCCAAAGTGACACTGAGTCAAAGACTGAAAGGAAAAAGCAACAGTGCTGCCATTTTCCTCGGACAAATACCCAATACCACAAAATTTTCAAAGACATTAGTGAGAATGAGCTGTTGAAACAAAGTTACACATGTGCATTGCAGAAAGATATTCTTTACCAAGGGAGACTTTTCGTGTCGGATAACTGGATTTGTTTCCACTCCAAAGTCTTTGGTAAAGACACCAAGATTGCCATTCCAGCTATATCTGTATCGGtaataaagaaaactaaaacTGCCATCTTAGTACCAAATGCACTGATTATTGCAACAGCACAAGAACGGtatgtttttgTGTCATTCCTGTCCCGAGACACTACATACAAGGTTTTGATGTCAGTGTGCTCCCATTTGGATGACAAGTGTTTGGGAAACAGTCCTATTCATTCCTCTGCAGATGGCAATTACACAGTGTCACCTTCCACACTTCCCATGAATTTCTCAGCAGATCTGTCAGATTTGGATGGCCCAGTGGTTCAAAGGAGACAAGAAATGGGATATAGCAGTAGCTCAGACTCTCCAGATTCACCAGAGTATGAGAAAATGccagAGTCTGCATTTTGCTTTTGTCTTCATGTTACATGGCTTTCAAGATCATATCTTTGGAAGAGAGGCTGGACTCTCTAGGCTCTATGGctgaatttattcataatggGTAAGATAAATCCATGAATGCCCAGTTCTTTTATTGGGATGAACTAAAAGATTCTTGATCAGTTTGGATGTTATGTGTCAATTACAGAGATGAGTACAACAGCGCATACTCTGAGGATGCTTCTAGGGTCTACTCTGCTGTGTCCATTAACCTTGTGAAGCTTGAAAAG
>XM_026913151.1
GACCTCCCCACGGACTAAAATCTGAGAACACAGATGGGTCTTTGCAAATAACTTCATAATAACATCAAGGGAGAAGAATCATTTCAGACTTTTGGAGATGGAAAAACCTTTTAGCTGTGATGACTCGCTCCTCAGAAACAGGACCAATGCTGTCCATTGCAGACCAACATGTTCTGTTTTACCCAGTCAACAGAACGAGCATGTGTTACAATGTCACAATGCTGAAAATGGGAATGAGGAGAACTCaaggaaaataacaaaatcaaATGTGCCCATATCAATGGACACTCAGTCTGAAATCTTGGAAAGAAGAGGAAAACCAACACTACTAATTAGGTCCAAAACATTTGATCCCTCCTTTCTTTCATATGTCCAAAGTGACACTGAGTCAAAGACTGAAAGGAAAAAGCAACAGTGCTGCCATTTTCCTCGGACAAATACCCAATACCACAAAATTTTCAAAGACATTAGTGAGAATGAGCTGTTGAAACAAAGTTACACATGTGCATTGCAGAAAGATATTCTTTACCAAGGGAGACTTTTCGTGTCGGATAACTGGATTTGTTTCCACTCCAAAGTCTTTGGTAAAGACACCAAGATTGCCATTCCAGCTATATCTGTATCGGtaataaagaaaactaaaacTGCCATCTTAGTACCAAATGCACTGATTATTGCAACAGCACAAGAACGGtatgtttttgTGTCATTCCTGTCCCGAGACACTACATACAAGGTTTTGATGTCAGTGTGCTCCCATTTGGATGACAAGTGTTTGGGAAACAGTCCTATTCATTCCTCTGCAGATGGCAATTACACAGTGTCACCTTCCACACTTCCCATGAATTTCTCAGCAGATCTGTCAGATTTGGATGGCCCAGTGGTTCAAAGGAGACAAGAAATGGGATATAGCAGTAGCTCAGACTCTCCAGATTCACCAGAGTATGAGAAAATGccagAGTCTGCATTTTGCTTTTGTCTTCATGTTACATGGCTTTCAAGATCATATCTTTGGAAGAGAGGCTGGACTCTCTAGGCTCTATGGctgaatttattcataatggAGATGAGTACAACAGCGCATACTCTGAGGATGCTTCTAGGGTCTACTCTGCTGTGTCCATTAACCTTGTGAAGCTTGAAAAG
>XM_026913159.2
ACAATGCTGAAAATGGGAATGAGGAGAACTCaaggaaaataacaaaatcaaATGTGCCCATATCAATGGACACTCAGTCTGAAATCTTGGAAAGAAGAGGAAAACCAACACTACTAATTAGGTCCAAAACATTTGATCCCTCCTTTCTTTCATATGTCCAAAGTGACACTGAGTCAAAGACTGAAAGGAAAAAGCAACAGTGCTGCCATGTTAGTGACTTTTCCTCGGACAAATACCCAATACCACAAAATTTTCAAAGACATTAGTGAGAATGAGCTGTTGAAACAAAGTTACACATGTGCATTGCAGAAAGATATTCTTTACCAAGGGAGACTTTTCGTGTCGGATAACTGGATTTGTTTCCACTCCAAAGTCTTTGGTAAAGACACCAAGATTGCCATTCCAGCTATATCTGTATCGGtaataaagaaaactaaaacTGCCATCTTAGTACCAAATGCACTGATTATTGCAACAGCACAAGAACGGtatgtttttgTGTCATTCCTGTCCCGAGACACTACATACAAGGTTTTGATGTCAGTGTGCTCCCATTTGGATGACAAGTGTTTGGGAAACAGTCCTATTCATTCCTCTGCAGATGGCAATTACACAGTGTCACCTTCCACACTTCCCATGAATTTCTCAGCAGATCTGTCAGATTTGGATGGCCCAGTGGTTCAAAGGAGACAAGAAATGGGATATAGCAGTAGCTCAGACTCTCCAGATTCACCAGAGTATGAGAAAATGccagAACACAAACGGAATGTTTATGAAAGTAAAACACTGAGACCAAGCTTGCTTAATGTTCTTCTGATGGTGTACCTATTTCTAGTCTGCATTTTGCTTTTGTCTTCATGTTACATGGCTTTCAAGATCATATCTTTGGAAGAGAGGCTGGACTCTCTAGGCTCTATGGctgaatttattcataatggAGATGAGTACAACAGCGCATACTCTGAGGATGCTTCTAGGGTCTACTCTGCTGTGTCCATTAACCTTGTGAAGCTTGAAAAGATAAAAAGAGGCCTACAGAGACTATTGGACAAAATCCAGTGACTTTAGATCATTCCTCAGATCTCAGTCACCACAAGGTACTGAGATCTTTATAGGGTGTACCGTTTATTGTTATTGCAAGTCATTGGCCAAGATAGGACTATAGAACATGGGCAATGTTTTCCTGGACataataaaagcacaaaataaagcTCCATTTTACTGCTAACAACCCCTGGATTATTAATCTTGGAATACCACCCCAGTGgcaattttgtttgttttttcctttgtaatgtttttctgtctctgaaaAGCATGGTAGAGGTGTGATGAAATTGTGTAACTCCACAAAAATGCTTTGTAAGATTTTGGTtgaaaccagaaaaaaatataattttgttcTTGCATCTGCTAGAGAAGCACAATGTTAGACCAAAGTGGGTTTGAAAATACCACTTCACCATCAAATCTCATATGTCTCACTTTTTGCTGAACCACTCCAACCATGTCAGTGCAGGCTCAGGTCTGATCACGACAATGGCAACTGTGTGGGAAAAAAGCATTCTGGCGCTATACTACTAATATATGCTTGGACTTGCTAGTAACTTGTAAAGTTAAAATGGTAGCTATATGAAGAACCGTAGATGccacaataaaatacattagtgCATCCACCTCTTTGGAAAAGGCCAGATTCAGTTATAATGCAATGCAAGTCTATGGAGAAATGCTAATGCCACCCTGATAAAATTGCCTGTAACTTATTTTTCCTTacaattttcacaaaatttgcTTCGTTCAAGACGTCATATGTTTTTGTACTATATCACAggttatgtaaatgtaaatatacctGCCATGTCAATATATTGATTGTGTCATGTCAACGCCAGAATCAGTGTCACACTACATCTCCGAGAACACAacacagcctacaaacatggccgccagaAACTACAACCCCCAGCAAACATTGACTCAGTCACGTTCACTGTCACCATTCTTCTAATCAtgcacacctggactcaatcatgAACCAGAccctaaatacacacacaaccccacAGTTAACTGCAAAATATATGTTTTGTGTCCTTGTTACTAGCGTTTACAAAGCCTTTAGATATTGTGAATCTGATGTTCTGGGTTTTGATTCTTGCCCTGCCTTTTCATGCTGTTTGCTAAtcacctgaccattgcctgtttcCTGTTCTGAGTTTGCCTCATGATTTGTATCTGTTTTGAAGCTGTCTAAATAAAGCTGTTTATACCTGC

Function

NR:

description
PREDICTED: GRAM domain-containing protein 3-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026913132.2 True 2482 mRNA 0.39 13 15336107 15340669
XM_026913142.2 False 1233 mRNA 0.40 10 15337483 15340669
XM_026913151.1 False 1146 mRNA 0.41 11 15337483 15340669
XM_026913159.2 False 2277 mRNA 0.39 12 15336107 15339945

Neighbor

gene id symbol gene type direction distance location
trnad-guc_2 NA coding downstream 440 15335596 ~ 15335667 (-)
LOC113529044 LOC108265961,LOC108442001,LOC107697601,LOC107712558,LOC105890695,LOC106587038,LOC104934760 coding downstream 3413 15312972 ~ 15332694 (-)
znf608 znf608 coding downstream 24814 15303812 ~ 15311293 (-)
LOC113533919 cep120,zgc:163014,LOC107712640 coding downstream 36981 15278994 ~ 15299126 (-)
LOC113536668 ppic,LOC107713556,LOC107704600,LOC107726227,LOC107566397,LOC100333141 coding downstream 102227 15230524 ~ 15233880 (-)
LOC113525393 NA coding upstream 23598 15364267 ~ 15376090 (-)
zgc:101664 LOC108265953 coding upstream 36676 15377345 ~ 15378971 (-)
LOC113528824 NA coding upstream 44628 15385297 ~ 15386530 (-)
mfsd14bb LOC108265778,LOC108430319,LOC103035659,LOC106587031,LOC105890793 coding upstream 62560 15403229 ~ 15415450 (-)
efna5b efna5,LOC108265807,LOC108430322,LOC100702629,LOC103397673,LOC106585191 coding upstream 197210 15537879 ~ 15623188 (-)
G133221 NA non-coding downstream 125244 15209467 ~ 15210863 (-)
G133184 NA non-coding downstream 203049 15132852 ~ 15133058 (-)
G133141 NA non-coding downstream 326404 15006579 ~ 15009703 (-)
G132570 NA non-coding downstream 1075468 14260285 ~ 14260639 (-)
G132568 NA non-coding downstream 1076370 14259517 ~ 14259737 (-)
G133320 NA non-coding upstream 8947 15349616 ~ 15357434 (-)
G133321 nudt12 non-coding upstream 11716 15352385 ~ 15359681 (-)
G133348 NA non-coding upstream 75141 15415810 ~ 15416040 (-)
G133356 NA non-coding upstream 84261 15424930 ~ 15425207 (-)
G133360 NA non-coding upstream 96316 15436985 ~ 15439670 (-)
LOC113532496 NA other downstream 155911 15177787 ~ 15180196 (-)
sema6a sema6a,LOC107661172,LOC107663594,LOC106585847 other downstream 272885 15001347 ~ 15063222 (-)
ccser1 ccser1 other downstream 516379 14742482 ~ 14819728 (-)
grid2 grid2,LOC107751431,LOC107594506,LOC107711862,LOC107669587 other downstream 611424 14330361 ~ 14724683 (-)
atoh1a atoh1 other downstream 1011690 14321909 ~ 14324417 (-)
ccl27a NA other upstream 609593 15950262 ~ 15952679 (-)
rnf165b rnf165,rnf165b,LOC108265796,LOC108430336,LOC107726876,LOC107569673 other upstream 744400 16085069 ~ 16099247 (-)
ikbkb ikbkb other upstream 2708079 18048748 ~ 18084489 (-)
dynll1 dynll1,LOC103397138,LOC107559583 other upstream 2912916 18253585 ~ 18262218 (-)
ndufa4l2a LOC108434410,LOC108265249,LOC107678808,LOC107571901,LOC103362772 other upstream 4355729 19696398 ~ 19698530 (-)

Expression


Co-expression Network