zgc:101664 (LOC108265953)


Basic Information

Item Value
gene id zgc:101664
gene name LOC108265953
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 15377345 ~ 15378971 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026928327.2
gtggtgaTGTGCCTGCAGTGTCACTGCGCCCAGTCCACAGCGCCTCTACTGGACAGGAGGCAGTATCACACTGCTACACAGGGCTAGTCTGTGGATAGCTCTTTATAGCTAACACATTAGACGCTGAAAAAAGTAAAGACAAACTCAAACTGACGCAGAAACGCCAGGATTTAAAAGAAGAGAGCTGCACGGTTATTGGATGGACGTATGTTTACACTACAAAAGTGACCAAGATAAATCGAATGGTTTGGTGTCTATATCTGAGAAGGCTCTAGAGGACTTTCCACGTCGTGTTTTGCCAATATTTACACCTTGGTTTCCTTCTGGCACTGACAGATCTTGTCCAATCAAACCTAAAAAGGCTCCTCCGGTCATTTCATTTAATCAGCAGAAAAGTTCTGAATTTGTCCCTCAACAACCAGAGTTTGTTTTTTCTACAAGTCACTGTCCAGATGATCAAGAGAAATTTGTGGATACCAGTaagaagaaattaatatcaatcCCAGCACCTGCTGATGAACACTCCAAGGCAGATTTGGAGAATGTGGCAAAGAAACGTAACGCTCATGGAGTGTCTTTCCACCAAAAAACGAAACCACCTCAGAGGACACAATACATCTCTAGACTGTTCCACAAAACTGTACAGAGATATGGGCTTGACTTGCACCAGAGAGCGAAGTGGATCATTTCTGAGCTGAACTGTGCACCACAGAGCATCGAGGAGGTTTGGTCCAAGCTCATCCATGCCATTAAGCACGCCAGGCTTCCAACATGCAATGCCAATTATCAAAGAGACTTGATCCAAATCTGGGTGTACTGTGACATATCTTACTGTGAATATATTGGAAATTTCTTGCGGGAAAATTTCCAGCTCTCAGGGGAGCTCACTTTAGCTGTCCATAAACTAGGAGACATCTTTAAACTGTAAGTAGTAAAGGGTCAGAAGTCAATATTAGTATGAGGGTACAATGTGATAATCTGTAATAGTTAAACGATTAACATTATGTTCTACCAGTACAGGTGATGATATCACTGAAACATTAACTTCATATGTGTGCATTGATGGAAATATGATGCAagattttttaaagagtttacTACTACTAGAAAGAATATATGAGGCAAAATCAGTAGTTTGGTATTTCTGCAATGTTTTGatgaaaacaaaaccaaacaagcataaaaaggtaaaaagaacaacattcatttctttttagaaGCCCCCATTGAAGGCTATTAGCATGATATACTGAAAGCAAGACGCTGGGTTGTACAATCATCACATCCCTtgttaaagcattttttttttagtgcattGTCTATCTGCCTATGaattgtaaaacattttcaataaaaaagaAGTTTTATGGAA

Function

NR:

description
uncharacterized protein FLJ26957-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026928327.2 True 1372 mRNA 0.40 3 15377345 15378971

Neighbor

gene id symbol gene type direction distance location
LOC113525393 NA coding downstream 1255 15364267 ~ 15376090 (-)
LOC113526253 LOC108265962 coding downstream 36676 15336107 ~ 15340669 (-)
trnad-guc_2 NA coding downstream 41678 15335596 ~ 15335667 (-)
LOC113529044 LOC108265961,LOC108442001,LOC107697601,LOC107712558,LOC105890695,LOC106587038,LOC104934760 coding downstream 44651 15312972 ~ 15332694 (-)
znf608 znf608 coding downstream 66052 15303812 ~ 15311293 (-)
LOC113528824 NA coding upstream 6326 15385297 ~ 15386530 (-)
mfsd14bb LOC108265778,LOC108430319,LOC103035659,LOC106587031,LOC105890793 coding upstream 24258 15403229 ~ 15415450 (-)
efna5b efna5,LOC108265807,LOC108430322,LOC100702629,LOC103397673,LOC106585191 coding upstream 158908 15537879 ~ 15623188 (-)
fbxl17 fbxl17,LOC102776382,LOC107570989 coding upstream 297221 15676192 ~ 15899448 (-)
slc35d2 slc35d2 coding upstream 551346 15930317 ~ 15945987 (-)
G133321 nudt12 non-coding downstream 17664 15352385 ~ 15359681 (-)
G133320 NA non-coding downstream 19911 15349616 ~ 15357434 (-)
G133221 NA non-coding downstream 166482 15209467 ~ 15210863 (-)
G133184 NA non-coding downstream 244287 15132852 ~ 15133058 (-)
G133141 NA non-coding downstream 367642 15006579 ~ 15009703 (-)
G133348 NA non-coding upstream 36839 15415810 ~ 15416040 (-)
G133356 NA non-coding upstream 45959 15424930 ~ 15425207 (-)
G133360 NA non-coding upstream 58014 15436985 ~ 15439670 (-)
LOC117597848 NA non-coding upstream 86273 15465244 ~ 15472266 (-)
G133552 NA non-coding upstream 195860 15574831 ~ 15627948 (-)
LOC113532496 NA other downstream 197149 15177787 ~ 15180196 (-)
sema6a sema6a,LOC107661172,LOC107663594,LOC106585847 other downstream 314123 15001347 ~ 15063222 (-)
ccser1 ccser1 other downstream 557617 14742482 ~ 14819728 (-)
grid2 grid2,LOC107751431,LOC107594506,LOC107711862,LOC107669587 other downstream 652662 14330361 ~ 14724683 (-)
atoh1a atoh1 other downstream 1052928 14321909 ~ 14324417 (-)
ccl27a NA other upstream 571291 15950262 ~ 15952679 (-)
rnf165b rnf165,rnf165b,LOC108265796,LOC108430336,LOC107726876,LOC107569673 other upstream 706098 16085069 ~ 16099247 (-)
ikbkb ikbkb other upstream 2669777 18048748 ~ 18084489 (-)
dynll1 dynll1,LOC103397138,LOC107559583 other upstream 2874614 18253585 ~ 18262218 (-)
ndufa4l2a LOC108434410,LOC108265249,LOC107678808,LOC107571901,LOC103362772 other upstream 4317427 19696398 ~ 19698530 (-)

Expression


Co-expression Network