RNA id: XM_026928327.2


Basic Information

Item Value
RNA id XM_026928327.2
length 1372
RNA type mRNA
GC content 0.40
exon number 3
gene id zgc:101664
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 15377345 ~ 15378971 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtggtgaTGTGCCTGCAGTGTCACTGCGCCCAGTCCACAGCGCCTCTACTGGACAGGAGGCAGTATCACACTGCTACACAGGGCTAGTCTGTGGATAGCTCTTTATAGCTAACACATTAGACGCTGAAAAAAGTAAAGACAAACTCAAACTGACGCAGAAACGCCAGGATTTAAAAGAAGAGAGCTGCACGGTTATTGGATGGACGTATGTTTACACTACAAAAGTGACCAAGATAAATCGAATGGTTTGGTGTCTATATCTGAGAAGGCTCTAGAGGACTTTCCACGTCGTGTTTTGCCAATATTTACACCTTGGTTTCCTTCTGGCACTGACAGATCTTGTCCAATCAAACCTAAAAAGGCTCCTCCGGTCATTTCATTTAATCAGCAGAAAAGTTCTGAATTTGTCCCTCAACAACCAGAGTTTGTTTTTTCTACAAGTCACTGTCCAGATGATCAAGAGAAATTTGTGGATACCAGTaagaagaaattaatatcaatcCCAGCACCTGCTGATGAACACTCCAAGGCAGATTTGGAGAATGTGGCAAAGAAACGTAACGCTCATGGAGTGTCTTTCCACCAAAAAACGAAACCACCTCAGAGGACACAATACATCTCTAGACTGTTCCACAAAACTGTACAGAGATATGGGCTTGACTTGCACCAGAGAGCGAAGTGGATCATTTCTGAGCTGAACTGTGCACCACAGAGCATCGAGGAGGTTTGGTCCAAGCTCATCCATGCCATTAAGCACGCCAGGCTTCCAACATGCAATGCCAATTATCAAAGAGACTTGATCCAAATCTGGGTGTACTGTGACATATCTTACTGTGAATATATTGGAAATTTCTTGCGGGAAAATTTCCAGCTCTCAGGGGAGCTCACTTTAGCTGTCCATAAACTAGGAGACATCTTTAAACTGTAAGTAGTAAAGGGTCAGAAGTCAATATTAGTATGAGGGTACAATGTGATAATCTGTAATAGTTAAACGATTAACATTATGTTCTACCAGTACAGGTGATGATATCACTGAAACATTAACTTCATATGTGTGCATTGATGGAAATATGATGCAagattttttaaagagtttacTACTACTAGAAAGAATATATGAGGCAAAATCAGTAGTTTGGTATTTCTGCAATGTTTTGatgaaaacaaaaccaaacaagcataaaaaggtaaaaagaacaacattcatttctttttagaaGCCCCCATTGAAGGCTATTAGCATGATATACTGAAAGCAAGACGCTGGGTTGTACAATCATCACATCCCTtgttaaagcattttttttttagtgcattGTCTATCTGCCTATGaattgtaaaacattttcaataaaaaagaAGTTTTATGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157471 lncRNA downstream 17664 15352385 ~ 15359681 (-) True G133321
TU157470 lncRNA downstream 19911 15349616 ~ 15357434 (-) True G133320
TU157334 lncRNA downstream 166482 15209467 ~ 15210863 (-) True G133221
TU157335 lncRNA downstream 167497 15209467 ~ 15209848 (-) False G133221
XR_003403349.2 lncRNA downstream 197149 15177787 ~ 15180196 (-) True LOC113532496
TU157516 lncRNA upstream 36839 15415810 ~ 15416040 (-) True G133348
TU157530 lncRNA upstream 45959 15424930 ~ 15425207 (-) True G133356
TU157540 lncRNA upstream 58014 15436985 ~ 15439670 (-) True G133360
XR_004578614.1 lncRNA upstream 86273 15465244 ~ 15472266 (-) True LOC117597848
TU157567 lncRNA upstream 86291 15465262 ~ 15465461 (-) False LOC117597848
XM_026911924.2 mRNA downstream 1255 15364267 ~ 15376090 (-) False LOC113525393
XM_034306502.1 mRNA downstream 1255 15364267 ~ 15376090 (-) False LOC113525393
XM_034306503.1 mRNA downstream 1847 15364267 ~ 15375498 (-) False LOC113525393
XM_034306504.1 mRNA downstream 2065 15364267 ~ 15375280 (-) True LOC113525393
XM_026913132.2 mRNA downstream 36676 15336107 ~ 15340669 (-) True LOC113526253
XM_026917609.2 mRNA upstream 6326 15385297 ~ 15386530 (-) True LOC113528824
XM_026922595.2 mRNA upstream 24258 15403229 ~ 15415450 (-) True mfsd14bb
XM_026924443.2 mRNA upstream 158908 15537879 ~ 15623188 (-) True efna5b
XM_026916757.2 mRNA upstream 297221 15676192 ~ 15899447 (-) False fbxl17
XM_026916766.2 mRNA upstream 297221 15676192 ~ 15899430 (-) False fbxl17
trnad-guc_2 other downstream 41678 15335596 ~ 15335667 (-) True trnad-guc_2
TU157316 other downstream 197221 15177789 ~ 15180124 (-) False LOC113532496
XR_003403097.2 other downstream 652662 14332392 ~ 14724683 (-) False grid2
XR_004578552.1 other downstream 1192408 14178891 ~ 14184937 (-) False hsd17b3
trnah-gug_9 other downstream 2297939 13079335 ~ 13079406 (-) True trnah-gug_9
TU157827 other upstream 571354 15950325 ~ 15952679 (-) False ccl27a
XR_004578582.1 other upstream 717661 16096632 ~ 16099234 (-) False rnf165b
TU159072 other upstream 2688285 18067256 ~ 18084483 (-) False ikbkb
TU159186 other upstream 2874614 18253585 ~ 18262218 (-) False dynll1
TU159181 other upstream 2880614 18259585 ~ 18261956 (-) False dynll1

Expression Profile