Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU159181 |
| length | 1231 |
| RNA type | TUCP |
| GC content | 0.39 |
| exon number | 3 |
| gene id | dynll1 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047602.1 |
| NCBI id | CM018548.1 |
| chromosome length | 30442583 |
| location | 18253585 ~ 18262218 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU159182 | lncRNA | downstream | 871 | 18253585 ~ 18258714 (-) | True | dynll1 |
| XR_003403434.2 | lncRNA | downstream | 37746 | 18221136 ~ 18221839 (-) | True | LOC113533613 |
| TU159169 | lncRNA | downstream | 44015 | 18214721 ~ 18215570 (-) | True | G134719 |
| TU159096 | lncRNA | downstream | 137971 | 18121347 ~ 18121614 (-) | True | G134654 |
| TU159095 | lncRNA | downstream | 138543 | 18120538 ~ 18121042 (-) | True | G134653 |
| TU159208 | lncRNA | upstream | 16584 | 18278540 ~ 18278767 (-) | True | G134748 |
| TU159398 | lncRNA | upstream | 37111 | 18299067 ~ 18299281 (-) | True | G134912 |
| XR_003403432.2 | lncRNA | upstream | 170766 | 18432722 ~ 18438804 (-) | True | LOC113533605 |
| TU159419 | lncRNA | upstream | 182910 | 18444866 ~ 18452086 (-) | True | G134933 |
| XR_004578646.1 | lncRNA | upstream | 335375 | 18597331 ~ 18618698 (-) | True | LOC117597883 |
| XM_026925388.2 | mRNA | downstream | 18923 | 18235114 ~ 18240662 (-) | False | mrpl40 |
| XM_026925387.2 | mRNA | downstream | 18931 | 18235114 ~ 18240654 (-) | True | mrpl40 |
| XM_034306865.1 | mRNA | downstream | 124344 | 18133140 ~ 18135241 (-) | True | LOC113533608 |
| XM_026925862.2 | mRNA | downstream | 124350 | 18133140 ~ 18135235 (-) | False | LOC113533608 |
| XM_026925785.2 | mRNA | downstream | 175096 | 18048748 ~ 18084489 (-) | False | ikbkb |
| XM_026925073.2 | mRNA | upstream | 61737 | 18323693 ~ 18395412 (-) | False | gapvd1 |
| XM_026925071.2 | mRNA | upstream | 61737 | 18323693 ~ 18395412 (-) | False | gapvd1 |
| XM_026925072.2 | mRNA | upstream | 61737 | 18323693 ~ 18395412 (-) | False | gapvd1 |
| XM_026925070.2 | mRNA | upstream | 61737 | 18323693 ~ 18395412 (-) | True | gapvd1 |
| XM_026925140.2 | mRNA | upstream | 1057294 | 19319250 ~ 19333394 (-) | True | angptl2b |
| TU159072 | other | downstream | 175102 | 18067256 ~ 18084483 (-) | False | ikbkb |
| XR_004578582.1 | other | downstream | 2160351 | 16096632 ~ 16099234 (-) | False | rnf165b |
| TU157827 | other | downstream | 2306906 | 15950325 ~ 15952679 (-) | False | ccl27a |
| trnad-guc_2 | other | downstream | 2923918 | 15335596 ~ 15335667 (-) | True | trnad-guc_2 |
| TU157316 | other | downstream | 3079461 | 15177789 ~ 15180124 (-) | False | LOC113532496 |
| TU160210 | other | upstream | 1728907 | 19990863 ~ 19993744 (-) | False | LOC113533329 |
| TU160320 | other | upstream | 1778341 | 20040297 ~ 20040688 (-) | True | G135737 |
| trnat-cgu_2 | other | upstream | 1778924 | 20040880 ~ 20040951 (-) | True | trnat-cgu_2 |
| TU160447 | other | upstream | 2009694 | 20271650 ~ 20273198 (-) | False | LOC117597783 |
| TU160844 | other | upstream | 2682719 | 20944675 ~ 20965470 (-) | False | gnb1a |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| grasscarp (Ctenopharyngodon idella) | TU77386 | True | 618 | TUCP | 0.47 | 3 | CI01000010 | 11928961 ~ 11932254 (-) |
| rainbow trout (Oncorhynchus mykiss) | TU77386 | True | 800 | lncRNA | 0.54 | 1 | NC_048565.1 | 63078898 ~ 63079697 (-) |
| eurasian perch (Perca fluviatilis) | TU226554 | False | 1080 | TUCP | 0.41 | 3 | NC_053127.1 | 20966895 ~ 20968815 (+) |
| mexican tetra (Astyanax mexicanus) | TU76140 | False | 1101 | lncRNA | 0.42 | 3 | NC_035902.1 | 35276094 ~ 35279120 (+) |
| mexican tetra (Astyanax mexicanus) | TU77386 | False | 768 | lncRNA | 0.54 | 3 | NC_035902.1 | 38261772 ~ 38305314 (-) |
