RNA id: TU159182


Basic Information

Item Value
RNA id TU159182
length 3419
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id dynll1
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 18253585 ~ 18262218 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGGGTGGAATAaccaggttttatttatttagaaaaccAGTTTGTGGGGATACACCCCATTGGAGAGGAAAAATTGGGAGCGCAGGTACCCTTTCAGCTGAGGAACTTTCTTAATGAGAGGCAACAGCTGAGAGTCAACAGCTTTCTGGTCTTCTTTCCGCTGCTCCGTCAGCTGGTATTCTCTTTTTCAGTGTCAAAGATCTCCCCTTCTTGGTGTTTGGGCTTCCtgagcttcttcttcttgaagTAAGCATCATTCAGGTTCTTGGGAAGCTTCACGCTTGAGATGTCCAGCTTGGTGGAAGTGGCAATACAGAACTTCTGATGGGCCCGACGCAGAGGAACTCTGTTCAAGGCTAAAGGACCTATAGAAGAACCATAAAGTCAGCTTGGAGCCAGTGACCAACAACAAGAGCACAAAAACTTGGACTAAGCCAATTTTCTGCAGTAAGCTTGGCCGTTTTAAGCCTCTTCTTGGCTGCACAgccagtaaataaaaacatacctGTGACAAGGAGAAGGCCACTAGACAGCTGCTTGAGAAAGACCACACGCTGGAAGTAGGAAAGAGGCAAGATTTTAGTCAAACAGCAATGTACTGTACTTGTTATTTCAGAATTCAGCCCAAAAGAATCTGAAAAGTGAAAACTGAAAAGTGCATTTTTCAAACACTTCCACTAAGACAATGACAAATAACTGCTATATCACTGTTCCCACCGCTTGGTCCCTGATGATGGATGATACAAGTGCCTGTAAGTTAGACTGGGGGGGACAGGACTAAATATATGGCTACTAAAGTCAAACCAATAGTCATTCTTATTTACAAGCTACAATTCGTTTGTttcaaaagaaagacaggaGTGAAATTTGTGCTTGTGGGAAGTGTGGAAGGTTCATCATTTTAGTGTGGGAGGACTGCAGCTGCAAGATGCCAACATGGCTGCGTTAACAAGCAGAGCTTTATACACTTGTACCATACCATCATATTCAAACAAATGACTGTCTTAATGACCAGCACATAAACTGATCACCGatttgtccttctttggaccacttttggtaggtactaaccactgcatacaaggaacaccccacaagacttGCCGTTTTGAAGATGcactgacccagtcgtctagccatcacaatttggcccttgtcactcagatccttacgctggcccatttttcttgcttccaacacatcaacttcaagaactaaCTGCTGcctttatatacacacacatacaccttgACAGATGCTATTGTAATGAGCCACCTGTAAGCGGCTCGAAtgttatgtttatataaaaatttaaaaaaagaagaaaaaaaaaaaaaaccacacacctCTATGAAAAGTCCACATAATCAAATATTTGGCAAATATCACTGGTCTGAAACTATGCATGAATATGTTCAAACTGAGGATTTTACAGAGCGTTTACCATCAGATCCTGTCACAagctgttttaaaattttaacagaCTACACTTTCAAATAGTCTCTATACAAGACTGAAAAATCAGGATGCGACAAtggaaaatgttatttatacttgtgttaaaagtattttttttgtacacttcATAAGTATTTTGAACGGTCTCACTCTGATTTAAACCACATTATAATCCAAATTTGATTAAACAAGAGCAAAAAATGTCAATGTTTCATCAAACCGTTTTCGTATACGCAAACACACCCCCCGCCAACCAATCAACTTTCTCCCAAAGCATTGCAACAAAGATACACATGTAGTTAGTAATAACCAACAGTGACAGCCCTGATGTGCAGTACAGTCGTTATAGGATCAGCCAATCTGtctagtcatttatttattgagggGTCTTAAAAGACTTGGTTATGccatttttcaattttcataTTATAGCCAGCACACCTagctttctttatcttttaccAACCTTTAAAATAAGACCACAAAAAAGACAGCTAATACTCACAGCATACTGACTACACAGTTTTTTGCAACTAGATTGCACTCATCTTCCTTGTGTCTAAGCACGAAAAGGGACATGTGGATTGTCTCATGGTGAACAGCGTATTCACAGTAAGTATAATAACTACCTTGCCACGGTGGCGCCCGGTGAGCATGATGAGTACAGTTCCAGGCGTGATGGAAGAGCGCAGTTTCCTCCTGTGCTGGCTGAAGGGCTTGATGCCATGACTGCGCAGCTTCCGGGGTACATCCTCTGTTGGGTAGTAAcgtggctgaaaaaaaaatgaagggaaagaaataaaatacaatgaaacTGAAATCAAGCTAGCTTTAAATCTCTTATTAGTTTTGATTTGAGTCCATGtgtttccttctgaaacaggcAGAAAGAGTGAAGTATTGAACTGCTAGACAGACATAGCACAGCCAATAACATTTAAGATGAGCCATATCACCAAATCTAAAACCCACCAATAGCTTAATAAACTAGATAAATAGGAAGAACAAAAGATTACAGAAAACCATTTACTTTTACTGATGGAGAGGCTCCAATTGTGTATAGACAACCACATTCTCATTCAATCTGAGGAAATAATATTTCAATCTTAAAGCCCCAAGTGAAACACCTTAGAAACACCCACCATAACCATAACCTCATACAAATTCACCCCTCTacaaaacacactccaaccGATTGTTTCCCTTAAACCAGTTGATGCACCAGAAACTGCGCAAGGAGACTTGGCCAAAACACAGACAATGTCTACAGCTCACAAGCTACCAGACCTGCCTCTGGTGGCAGGAGATATATAGCATTTAGCTAGATGATCAGTTTGTGCCTAGTTATGAGCCTTCTAAATATTTTACTGCTTTTCCAGAAATGATCAACTATaaacttaaaatgaaaatatctccAAAATAATCCTTTTCTTTTCAGATGGAACATTATACCATTGTCCATAACAttaatgatttttgtttgttccttGATTTCAGGGGAACTTCAATCAATACTTGTCAGAAGAACATTTCCATCTTAGACTATCACTtagtaaagaaagaaacagcactgctttaaagaaagaaagaaaaggggggAAACTCACCATCTTGCGCAGTCGGATGACACGGGTACCTCCATTCTTGTCTCCACCAACAGTTTTCACCACAGTGGTAGGGGGCTTCTCCTTCAGCTTCTTCTCAATCTGTGTTTTAACATGCATCACATTTCACTCCAAACTTTTCCACTCCAtttatattttgtcatttcCAATCCATGCCAGTTGCCAGATTCAGTGCTGTGCACTCACCTTGGATTCAGGTGCCTTGGTCTTCCTCTTGTACATGGCGCGCCGGGCGAACATGGCCGAGCGGGAGTAGCGGCCAATGCCCCTGGCCAGGACAGGGTTGCGGCTGCAGTGCCGCTTGCGGGCAACGCGCTTTTTATCACCCTCAGCCatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003403434.2 lncRNA downstream 31746 18221136 ~ 18221839 (-) True LOC113533613
TU159169 lncRNA downstream 38015 18214721 ~ 18215570 (-) True G134719
TU159096 lncRNA downstream 131971 18121347 ~ 18121614 (-) True G134654
TU159095 lncRNA downstream 132543 18120538 ~ 18121042 (-) True G134653
TU159093 lncRNA downstream 134128 18114209 ~ 18119457 (-) True G134651
TU159208 lncRNA upstream 19826 18278540 ~ 18278767 (-) True G134748
TU159398 lncRNA upstream 40353 18299067 ~ 18299281 (-) True G134912
XR_003403432.2 lncRNA upstream 174008 18432722 ~ 18438804 (-) True LOC113533605
TU159419 lncRNA upstream 186152 18444866 ~ 18452086 (-) True G134933
XR_004578646.1 lncRNA upstream 338617 18597331 ~ 18618698 (-) True LOC117597883
XM_026925388.2 mRNA downstream 12923 18235114 ~ 18240662 (-) False mrpl40
XM_026925387.2 mRNA downstream 12931 18235114 ~ 18240654 (-) True mrpl40
XM_034306865.1 mRNA downstream 118344 18133140 ~ 18135241 (-) True LOC113533608
XM_026925862.2 mRNA downstream 118350 18133140 ~ 18135235 (-) False LOC113533608
XM_026925785.2 mRNA downstream 169096 18048748 ~ 18084489 (-) False ikbkb
XM_026924974.2 mRNA upstream 869 18259583 ~ 18261946 (-) False dynll1
XM_026925073.2 mRNA upstream 64979 18323693 ~ 18395412 (-) False gapvd1
XM_026925071.2 mRNA upstream 64979 18323693 ~ 18395412 (-) False gapvd1
XM_026925072.2 mRNA upstream 64979 18323693 ~ 18395412 (-) False gapvd1
XM_026925070.2 mRNA upstream 64979 18323693 ~ 18395412 (-) True gapvd1
TU159072 other downstream 169102 18067256 ~ 18084483 (-) False ikbkb
XR_004578582.1 other downstream 2154351 16096632 ~ 16099234 (-) False rnf165b
TU157827 other downstream 2300906 15950325 ~ 15952679 (-) False ccl27a
trnad-guc_2 other downstream 2917918 15335596 ~ 15335667 (-) True trnad-guc_2
TU157316 other downstream 3073461 15177789 ~ 15180124 (-) False LOC113532496
TU159181 other upstream 871 18259585 ~ 18261956 (-) False dynll1
TU160210 other upstream 1732149 19990863 ~ 19993744 (-) False LOC113533329
TU160320 other upstream 1781583 20040297 ~ 20040688 (-) True G135737
trnat-cgu_2 other upstream 1782166 20040880 ~ 20040951 (-) True trnat-cgu_2
TU160447 other upstream 2012936 20271650 ~ 20273198 (-) False LOC117597783

Expression Profile