RNA id: XM_026925073.2


Basic Information

Item Value
RNA id XM_026925073.2
length 6069
RNA type mRNA
GC content 0.45
exon number 27
gene id gapvd1
representative False

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 18323693 ~ 18395412 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGAGATTTTGCTAGCGGTATCGGAAGCCTTGCTATCCCTTTAGCCAAGCGTAGGCCAATAAACCCTCTTTGGTAGGACTCTGGAACCCAGAACAGCGAATTCACAAACGGACCCGTCGTCACCAGCAGTCGCATTTGTTGCTAAGTTACAATCTTCGTGCTGTGTATTCTGTCCTGTGGCTGAGCTAAAAGATGGTGAAGCCAGACATTCACACTCTGGCCCACCACCTGAAACAGGAGAGGCTATACGTGGCTTCAGAGAAACAGCTTATCCAGCGTCTCAATTGTGAAGTACTAAAGACAGCAGAAAGGCTCTACCGCGCAGCCTGGATAGCCAAACAACAGAGGATTAACCTTGATCGTCTCATCCTCACCAGTGCTGAGGCATCCCCGGCCGAATGCTGCTTGCATGCTAAGGTGTTAGAGAGTACGCAGTTTGTTGACGGCTACAAGACTCTGGGCTTTCAGGAGAGTATCTATGGAGAGTTCCTTGGGCGGCTGAGGGAAAATCCACGCCTGGTGGCCTCCTGTCTGGTTGCTGGGGAGAAGCTTAACCAAGAACATACACAAGGAGTGATCCACACTGTTTTTACCTCACTTTATGGCAACTGCATCATGCAAGAGGATGAAGTCTACCTACTACAAGTCCTGCGTTACCTAGTTGAGTTCGAGCTTAAGGAGAGTGATAATCCACGTCGTCTGCTACGGCGGGGCACATGTGCTTTTAGTATCCTCTTTAAGCTATTCTCTGAGGGCCTGTACTCTGCCAAGTTATTTCTCACAGCCACCTTACATGAGCCCATTATGCAGCTATTGGTGGAGGATGAAGACCACCTAGAGACTGATCCAGCCAAAGTGACTGAAAGATTCACCCCAACACAACAGGAGCGCCTGTTTGGGGAGAAGGGCTCTGATTCTTACTGTCAAAAGGTTCAGGCAGTTGTAGAATCCAACCAAGCCAAGCTTGTGGCTCTTGTTAATACATTTATTGGCTATTTGAAGCAAAATACCTACTGCTTCCCTCAGAGCTTGCGCTGGATCGTGTCACAAATGTACAAATCACTGGCGCAAGTGGAAGGGCTGGAGGTTGGGGAGGTGAGGACCATGTGCACAGACCTGTTGCTGACTTGTTTCATCTGCCCAGCCATTGTCAACCCTGAACAGTATGGAATCATCTCGGACGCACCCATTAATGAAGTGGCACGCTTTAACCTAATGCAGGTGGGGCAGTTGCTACAGCAGTTAGCCATGGCTGACACAGATGATGGAGATCCTCGACGGAAAAGCAATTTATCAAAATTTGACAAAAGTTGTGTCGCTGCCTTTTTGGATGTAATGATTGGTGGAAGAACTGTGGAGACCCCTCCCATGTCTTCAATGAACCTCTTAGAGGGTCTCACACGAACTGTGGTTTATATCACAAACAATCAGCTTCTGGCTTTGGTGGACTTTGTGCGCGGTGTGACTGCTGGTGACCAGCTCAGAGAGGAAGACCATTTAGCTCTGGAGGCTCTGCAAGCCAATGTACCTCAGTCCCATGCAGTGAAGAGCAACAGCTTGGAGCTCACACCTCAGCTTTCCCCAGCTACTACACCTGCCAACAGGAAGAACAGACTACCCCTAGCAACCCGTAGCCGCTCCCGCTCCAACATCGCTCAGGACAGTGAGGCGGACCCTAGCTACCAGGACCCACAGCAGGAAGTCATGCCTGAGGAGGTGCTTGTCATCTCATTGGGAACTTCCTCTCAGACTATGCCTGGAATGATGCCTGAAAATGAGgtGCTGAACTTGCAACTTTCTGATGAAGCTCAAGGAGATGCCCCAGCTGATGAGGCTAAACTGCATGGCAAACCTGACAAAACCCTCCGCTTCTCTCTATGCAGTGACaatctggaaggagtctctgaGGGGCCATCTAACCGCTCCAACTCTGTCTCATCTCTGGACATGGAAGCGGAATCTGTGTCGGACTTAGGCCCAGGGCCATCCGCCAGTAATGGTGTTGAAGCTCTGCAGCTGCTGGAACATGAACAAGCCACCACGCAGGATAATCTGGATGATAAACTTCGAAAGTTTGAGATTCGGGACATGATGGGTCTGACAGATGATCGGGATATCTCTGAGACTGTCAGTGAAACCTGGAGCACTGACGTCCTTGGTAGTGATTTTGATCCTAATATAGATGAAGACAGACTTCAGGAAATATCAGGGGCTATGGTGGAAAACATGCTGGGGAGTCTGCTATGCTTCCCCACACCTGGCCCTATTCTTTTGGACCCCTGCGGTTCAACAATGTCTGAGACCACAAGTGAAGCCTGGAGTGTGGAAGTCCTGCCCAGTGACTCAGaaactgCAGATTTAAAGCAAGAGGACCGCTTGCAGGAGTTAGAAAGCTGCTCAGGGGTGGGCAGCACTTCAGATGATACTGAAGTCAGAGAGGTCAGCTCCCGACCAAGCACCCCAGGATTAAGCATCATCTCAGGTATTAGTGCAACATCTGAAGACATCCCCAACAAGATCGAAGACCTGCGCTCAGAATGTAGCTCAGATTTTGGAGGCAAAGACTCTGTCACAAGCCCAGATGGAGAGGATTCTGTACACGGAGCACATGGTTTGTCCTGTGTGCCTGCTCAAGCTGACACTCTGCTGTCCATGTTTGATCCGCTCTCCTCTGGAGAAGGTACTGGCACCATAGTTCGGCCCAAGGCGCACTACACCAGACCCCCTCATCCTCCCCCAGACCCACCGATCCCAGAGGCTTGTGCCACAGGACCTTCTGAACCCAGGGCATCTCTCTTCTCCATCCACGATCCGGAGCACCCCAAGCAGAGGCATTCATACCCTGAGCGTCTGGTCAGGAGCCGCAGCACGGACATAGTCTGTGCAGGGCGCAGACCCAACAGTGATCCAGGCATAAACCGCAGGACCATGGTTGAGGATCAGGACCAAGCAGTTGCTTTCGCTACTGGATCCACAACGTCCCCAAGCAAAGATTCACTCAAAGTGGAGaTTGATGACAAGAAGGACAGTGATGATGAGAAATCAGACAGGAACAGACCCTGGTGGAAGAAACGGTTTGTTCCTGCCATTCCTAAAGCACCAATCGCAGCATTCCGAAAGCGGGACAAGCACGAGAAAGACGACCTGGGAGCAGAGAAGGTCCCTCAAGATGAGCCTTCATTATTGGGGCAGAGCTGTCAGGCTCAGGCAGTAGAAGACATATTGGACAAATACAGGAACATTAAGAGAACCAGCCCGAGTGAGGGAGCAACACCGACCACCTATGATGTAACAGAAATGTGTAAAGAGGGTGAAAGTGAACATAAATCCCATAGAAATGAGGGCCTGCAGAACATCTCTACGGATGACCTGATGGACTCTGCAAGCCAGACAGCACAGCCCCAGGACAGCAAGTTTTCCTTTAGtgATGCTAAGAAGAAATTACGTCTGGCTCTGTGCTCTGCAgattctgttgtttttcctaTTATGCCCACTGTAACACGGAATGGCCTCCCTGACCATGCAGATCCTGAGgACAATGAGATTGTGTGCTTTCTGAAAGTGCAGCTAGCAGAGGCTATTAACTTGCAGGATAAAAACCAGATGGCTCAGATCCAGGAGACCATGCGTTGTGTCAGTCGCCTCGACCCACGCACCTGCAGAAAGCTGCTCACAGCAATTGCTGAGGACTACAGAAAGCGGGCTCCATACATAGCGTATTTGACACGGTGCCGGCAGGGACTGCAGACTTCTCAGGCTCATCTAGAGAAGCTGTTGCAGAGAGTTCTTAGAGATAAAGAAGTGGCCAACCGCTATTTTACTACTGTCTGTGTCCGACTGCTTCTAGAACGTATGGAGTCCAGGATGCAGGACTTTATCAgagCATTTCAGAGCTTCACAGCAGCTGATGATAAAACTGCAGCAGTGGAGGATTTCCTGCGTTACCTCTATGGTGCGATGGCGCATGATGTCATCTGGCAATATGCCAGTGAGGAACAGCTACAGGATGCCCAGATGGCTATTGAGCGCAGTGTCATGAATCGCATCTTCAAACTGGCTTTCTACCCAAACCAGGATGGAGACATTCTGCGAGACCAGGTTCTGCAGGAGCATATTAATCGTCTGTCCAAAGTAGTGACTGCCAACCACAAGGCCCTCCAAATCCCAGAGGTGTATCTGAAAGAGGCTCCATGGCCTTCTGCACAGGCAGAGATCAGGACGATCAGTGCATACAAGACGCCGCGGGACAAAGTGCAGTGCATCCTGCGCATGTGCTCCACCATCATGAATCTGCTCAGCTTGGCCAATGAGGATGCTGTACCTGGAGCTGATGACTTTGTCCCTGTGCTTGTATTTGTTCTTATAAAGGCAAACCCACCCTGCCTTCTGTCCACCATTCAGTACATCTGTAATTTCTATGCCAGTCAGCTGAGTGGAGAGGAGTGCTATTGGTGGATGCAGTTCACAGCCGCTGTTGAATTTATTAAAACCATCGACGAGCGCAAGTGAAGCAGAACAGCCACCTGTATGGGCAACTGttgaaggagaaggagaaaaagatgaGACTTCACAACCAACTACACTGTCTTTCACTAAACCTACTCAACAAGGCACTGCTTCACTTTGTCTAGGTCATTTAACTGTATTTAGAGCCACAGAGGCATtgaatgtgtataaaaaaaaaaataataaaaagaaaaagaaaaaaaaaaaaaaggaaaaagtgccattatattaaaaaataaaagtaaactaAGTACAATTATGTGAGGTGATGTAGCTAGATTTAACTGTAGAGGAGGAAGGGTACCATACATTGACCTTAAACTAATTTTGGACTATATCCCTTATTTTGAGTGAGGTGGTGGGACttactatgtttttttttggttttttaatGATCAATATTtaacatgaatatttaaatatctcAGTGAATTAAAGAAGGGACCAGCCTTTTTGATTGTGTAATTATATTAGTGAAGGCAAGCTTAAGAGACGAATTAAGAACCATGCATTCTCCTGTACATTTTGCaaccatttatcatttaaaaccCTCCATCATAACACAGACTCATAAATATCACTAGCATATCACCCTGTTGCAGTTTTTGTGATTGTTACTTGCATCACGCTTTTTAAAAAGGCAGTTGGTTAAAATTATGTATGCTGgtgttcatgttcatttatcatttctcttccatGACAAGTAAGGGCATGCATATTTATGTAACTAAAAGtatatttattctttgttttatatatataatgatatttttcaaATTGGCCATTGGATGAGAGTAATGGAACAGGCACTGTGGAGGAATATTGCtcaaatgatataaaatatactgaGAACAGAAAAAACACGATTTCCTTGTGTGAGCAGATAAATTTGTGCTGTGTATAACTCTGTATTTGCTAATCAAATTTCTGGTTtgatttactattttaattttaattcaattttagtaATTTAGTTTTGGTATTGGTGTATGTTTTCACCCATTTCTTAGAGTGGGATAAATTCTATGCTGAATATAACAACCAAGTATATGCTGCCAGTAGAGCTTATGATTGATACATTGATACCTAAAGCAATTACCTATAATCTtgtctagtgttttttttttttttttttaggggggttgttttgttttttgtttttcacatttacataGCTGTACatagaaaaaaatctgtaattggCGTTTGGCTTACAAATGGTACATAATggttgaaaattggaaaaacttaaaattacagttaaatggacccatttactttttgtttcttGTTGACACAGGAACTTTCATTTAAGTGGAACAGATCTCATACAAATTCTCATTTAGTCTCATAATTATTTTAAGAAAGaactaaaataaactgtaatgccTTCTGTTCTTTTATTGTCCTACcagtatgttgtttttttttttaaataacttttccTTCTAACTTGCTCTTTCTCATTTAGCTTATGTGTGATTAGCAAATGCCACCTACAACAAAGACCTTCATTTGCAGCATACTtgaatgttcattaaaaatatatatatatatttttaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159398 lncRNA downstream 24412 18299067 ~ 18299281 (-) True G134912
TU159208 lncRNA downstream 44926 18278540 ~ 18278767 (-) True G134748
TU159182 lncRNA downstream 64979 18253585 ~ 18258714 (-) True dynll1
XR_003403434.2 lncRNA downstream 101854 18221136 ~ 18221839 (-) True LOC113533613
TU159169 lncRNA downstream 108123 18214721 ~ 18215570 (-) True G134719
XR_003403432.2 lncRNA upstream 37310 18432722 ~ 18438804 (-) True LOC113533605
TU159419 lncRNA upstream 49454 18444866 ~ 18452086 (-) True G134933
XR_004578646.1 lncRNA upstream 201919 18597331 ~ 18618698 (-) True LOC117597883
TU159495 lncRNA upstream 211963 18607375 ~ 18664875 (-) True G134991
TU159574 lncRNA upstream 310204 18705616 ~ 18705998 (-) True G135069
XM_026924974.2 mRNA downstream 61747 18259583 ~ 18261946 (-) False dynll1
XM_026925388.2 mRNA downstream 83031 18235114 ~ 18240662 (-) False mrpl40
XM_026925387.2 mRNA downstream 83039 18235114 ~ 18240654 (-) True mrpl40
XM_034306865.1 mRNA downstream 188452 18133140 ~ 18135241 (-) True LOC113533608
XM_026925862.2 mRNA downstream 188458 18133140 ~ 18135235 (-) False LOC113533608
XM_026925140.2 mRNA upstream 923838 19319250 ~ 19333394 (-) True angptl2b
XM_034306510.1 mRNA upstream 1117742 19513154 ~ 19556180 (-) True LOC113533276
XM_026925317.2 mRNA upstream 1163019 19558431 ~ 19574926 (-) False aaas
XM_026925318.2 mRNA upstream 1163019 19558431 ~ 19574754 (-) True aaas
XM_034306702.1 mRNA upstream 1215115 19610527 ~ 19627859 (-) True pcbp2
TU159186 other downstream 61475 18253585 ~ 18262218 (-) False dynll1
TU159181 other downstream 61737 18259585 ~ 18261956 (-) False dynll1
TU159072 other downstream 239210 18067256 ~ 18084483 (-) False ikbkb
XR_004578582.1 other downstream 2224459 16096632 ~ 16099234 (-) False rnf165b
TU157827 other downstream 2371014 15950325 ~ 15952679 (-) False ccl27a
TU160210 other upstream 1595451 19990863 ~ 19993744 (-) False LOC113533329
TU160320 other upstream 1644885 20040297 ~ 20040688 (-) True G135737
trnat-cgu_2 other upstream 1645468 20040880 ~ 20040951 (-) True trnat-cgu_2
TU160447 other upstream 1876238 20271650 ~ 20273198 (-) False LOC117597783
TU160844 other upstream 2549263 20944675 ~ 20965470 (-) False gnb1a

Expression Profile