RNA id: TU159095


Basic Information

Item Value
RNA id TU159095
length 505
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G134653
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 18120538 ~ 18121042 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gaagaatatgagagattgttgtcatgTGCAGGAaataatcagtacttgtcagatattcctgcagctcctttaatggtgccgtaggtctcttgacagcctccctggtaagtttttgtcttgtccttttataaattttggaggggctttctgttcttggtgatgtcactgtggtgctccattttctctacttgttgatgatggccttccccgtgttccatggtacatctaatgttttggaaattcttttatacctctctcctgatcaatatctttcaacaagtgagataccatgcatgctttgtaagctcatTGCAGACCAGCaggcttcagcagtcggatgaaacccAGATTTCAACTAAACTACAGaaactacagaaacagctgatcttaaatggggttaatcagaataatttcactgacaGCCAtaaaattacttttgaacatgagattgaatgtgattggttcattctgaacacagccacatccccaaatATAAAAGGGTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159093 lncRNA downstream 1081 18114209 ~ 18119457 (-) True G134651
TU159075 lncRNA downstream 56717 18047189 ~ 18063821 (-) True G134633
XR_004578579.1 lncRNA downstream 191254 17921834 ~ 17929284 (-) False LOC113533575
XR_003403427.2 lncRNA downstream 194337 17921834 ~ 17926201 (-) True LOC113533575
TU159036 lncRNA downstream 194344 17921851 ~ 17926194 (-) False LOC113533575
TU159096 lncRNA upstream 305 18121347 ~ 18121614 (-) True G134654
TU159169 lncRNA upstream 93679 18214721 ~ 18215570 (-) True G134719
XR_003403434.2 lncRNA upstream 100094 18221136 ~ 18221839 (-) True LOC113533613
TU159182 lncRNA upstream 132543 18253585 ~ 18258714 (-) True dynll1
TU159208 lncRNA upstream 157498 18278540 ~ 18278767 (-) True G134748
XM_026925785.2 mRNA downstream 36049 18048748 ~ 18084489 (-) False ikbkb
XM_034306554.1 mRNA downstream 36049 18048748 ~ 18084489 (-) True ikbkb
XM_026925787.2 mRNA downstream 113198 17947066 ~ 18007340 (-) True si:dkeyp-117b11.1
XM_026925743.2 mRNA downstream 231088 17877415 ~ 17889450 (-) False snap29
XM_034306865.1 mRNA upstream 12098 18133140 ~ 18135241 (-) True LOC113533608
XM_026925862.2 mRNA upstream 12098 18133140 ~ 18135235 (-) False LOC113533608
XM_026925388.2 mRNA upstream 114072 18235114 ~ 18240662 (-) False mrpl40
XM_026925387.2 mRNA upstream 114072 18235114 ~ 18240654 (-) True mrpl40
XM_026924974.2 mRNA upstream 138541 18259583 ~ 18261946 (-) False dynll1
TU159072 other downstream 36055 18067256 ~ 18084483 (-) False ikbkb
XR_004578582.1 other downstream 2021304 16096632 ~ 16099234 (-) False rnf165b
TU157827 other downstream 2167859 15950325 ~ 15952679 (-) False ccl27a
trnad-guc_2 other downstream 2784871 15335596 ~ 15335667 (-) True trnad-guc_2
TU157316 other downstream 2940414 15177789 ~ 15180124 (-) False LOC113532496
TU159186 other upstream 132543 18253585 ~ 18262218 (-) False dynll1
TU159181 other upstream 138543 18259585 ~ 18261956 (-) False dynll1
TU160210 other upstream 1869821 19990863 ~ 19993744 (-) False LOC113533329
TU160320 other upstream 1919255 20040297 ~ 20040688 (-) True G135737
trnat-cgu_2 other upstream 1919838 20040880 ~ 20040951 (-) True trnat-cgu_2

Expression Profile