efna5b (efna5,LOC108265807,LOC108430322,LOC100702629,LOC103397673,LOC106585191)


Basic Information

Item Value
gene id efna5b
gene name efna5,LOC108265807,LOC108430322,LOC100702629,LOC103397673,LOC106585191
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 15537879 ~ 15623188 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026924443.2
gtgtgtgtgagagagagagagagagagagagggagctgTGCGTGGCTGATGATTAGCATGACGCGCAGGAATGGTATTCGGACTTCTTCGTGTGTGCTCGTAGCTGATAGATTCTCAGGCGGACCAGGCGACTCCTCCCCATCTCCTCCGTGACACTACTTTTcggttgttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttttggagcgCGTGTTTGGGGAAACAGAAGAGACAGAAGCGAGGCTGACTTTGAGCAGAGAATGGCGTTGTGAAAGTTCTCCTGAAGCGCTGATACTGCGCGACGCCGGTGTTGTGTTTCCGCCTGAGAGACGCGCGCGCAGTCTTGTGCTTTCTGCTGCGAAGCGACCTCGAGCTGAGGCTTTAGTGAGACATCCAGGCTTGGCTTTCAGTTGACCGGACTGCAGCATGTTCTAGCGGTTGCTGTGCTGCTCCACAAGGCCGTTTTGGAGCTCTCGAGAGCTGTCACTGCTGTTGCGCGTGTGGCAGTGCGTGTGGCAGTGCGTGTGCTGCTGCAGGGAGAGATGGTCGCTCTGATCAACTTAAGAAGCAGCGCCAACGCGTAAAGTCGAAGCCAGACATCCCGTGGACGGTGACCGATTTTTATAAAGAATAATCGCTGCCAGGCATTTTTCTAGGTCTGATCTCTTCTATCCTGTGCACAGTgcctgatctgttttttttttttaataaataaacgaGCTCGTGGACATTTTCGCATTTTTCTACTCtatgtttgtctttgtttctaCGAATCCGACTGCGCGGAGGACATCGAGGCCACTGATGTAACTCCAGCTGAAacgtgtgacagagagagagagagagagagagagagagaaagagagagagagagagaaaacacagctgATAGCACAGCAAGCACGCCTGCTTCTGGCTTTtagagaaaggaataaaacgcaCATCTTGGTCGTAGTGATGCTGCAAGTGGAAATGGtgctgttggtgtgtgtgttgctgtggaTGTGTGTGCTGAGCCAGGAGCCGAGCTCCAAGGTGATGGCTGACCGCTACGCTGTCTACTGGAACCGCACGAACCCCAGGTTTCACCGTGGAGACTACCACATTGACGTCTGCATAAACGACTACCTGGATGTCTACTGCCCACACTATGAGGACTCAGTGCCTGAGGAGAGGACCGAGCGCTATGTCCTCTACATGGTGAACTACGATGGCTACAGCACCTGTGATGACACAGCCAAGGGCTTCAAGCGTTGGGAGTGCAACAGGCCACACTCGCCCAATGGGCCACTCAAATTCTCTGAGAAGTTCCAGCTCTTCACACCCTTCTCCCTGGGTTTTGAGTTCCGGCCAGGCCGAGAGTACTATTATATATCATCCATGGTTACAGAGAGTGGAAGAAAAGGTTGTCTTAAGCTGAAAGTTTTTGTCAGACCAGCAAACAGCTGTGTGAAAATCATAGGTGTTCATGATCGAGTGTTTGACGTTAATGACAAAGTAGACAATTCATTAGAACCAAGAGATGATACCAGTCACGAATCAGCCGAACCTTCTCGGAGCGATACAGCTAATTCAGGGCATCGGCCCCTGATGGCACGTCCACTGATGGCTTTCTTGCTGTTCTGCATTTCTGCACTTCTCACCTTATAGCCCCGTATGTCCTTCCTGCAGACAAGTCCCAGCAGCCCCCACTACTCCTTGCCCAAGCAGCCACAAGGCTTGTACAGGCAAGGGCTGCAGGCCACAGGATTCTTCTGAGACTCTCCAGGAGCACTACATTTGGCcctttttccaaatatttaagTGGTCCTTTATCAAGAAGAAAAGATTGATTAGTAGTATGAGGGAGAAAAGCTAATCTGGCCTTTAGAAAATCAGCGGTGAACTCAATCAAGTTGTAACATCACTTGGGATCCATTCCAAGTAGCCAAGTTTGAAAAACTGTGGTTTTAAgtggtttttaattaaaataaacatgtacaaATGTCTACATAAAGGGTGTTCCCTGGTACAGATTTATGAGACATTGAAGGTCTATTTGTCAGTTTGTTCctgttggcttttttttcctACCCCATAAAAATTTGCAAGGATCAACAGATTGTCAAAATCTAAATTTGACTAAAACTGCGTATGTCCAGATGGCTGGAAGTCTGGAGATTGCACTCAAAGGGGAAAATGGCTGTGTACGTTAATTGACATAATGTTGCATTGGAAATGAGAGGGAGGTAAAACATTTATTCTCTGCAAACAAGGGACTTATCTTAGTAGACCACAGCATTAAAACagtgcttttgtattttgtaggATAAACCTACTGCAGCATAAATAACTCTATTTTTCCTGTTGGCTTTTATCTATTGATATAAAATAGCAGCATTAACAAATCATAAAAACTCCTGGTCATAATGACTGTGAGTGTGCAGCTCTGTATATACAGCACCACAAGAGACTGCACATAGTAGACATTATTTCCCCCTAATTTTCTGGATGGAAATATTAGCATCTCTTGCACTCAGCTTTGCAAATAAGATCCAGagctagggaaaaaaaatgtatttaaatctaaagaagcattttattttcaactGCATTGAAATGGCCATTAACCCACGTAAAGTGCCCACATATTCTTatacaacattaacattaactgtgACACCAGATTTCTTTGTGAGCGTGCTCTTTGCCTTTGCATGGCAGCCTTAGatataaaatgtgcttttgtCAGGCCTGCAGCAAGTAGGCTCAGGCTTGAGTAAGACCAGAGCGTGCCGAGTTACACCTCTAACTGTTTCCAATTTAAGTGACTCTCTAATGAGGTTTCAATTTGGCTGGCATGCAGAGCCTATGCTGTCTGTATTTTTGGTATTGAAACTAGAAGGTTAATTGCATGGACAGTGCTGAGGTGACTCAGATTTCACTGGGACTTTTTTTAACCTTGTGGTCAGAGGGTTCTGTGTGGAGTACACAAACAACAGCTCAGGCTGAGAAGTTGTTGTGGTGAAGGCTTTGGCAATTAGGTAGCTGGCACAATAAACAATGGTGGGAACTTTTGAAAAAGTCTGATATTGTGtaattgtttctgtttttcaatTCTCAGTAGGCCCGTTTTTCCCTACTTTCCCTTTCTGGGGTCCTGGAGAGAAGGTGCATTCCTGTTAGAATGGTAACTGTCTGTGCAGAAAGACCACTTGGGATGTTAAACTAATTTAGATGAGGAAAAATGCCACCACATGTGCTTAATTTCATGGTCCAAATCCAAAACTATGGAAGCCTTTGGAACTCTAATCCAATAGTATTTGTATACCTACCATTTATACTCTTGATTATTATGCTTATCatactttatacacactttaaaacaggaaataaggcGCAATTACATGGATACTGTGTATCCTAAAGTAGTCAAGATGTCATTAAACAactacagaaaacatcactgaccacattattattattattattattattattattattattattattattattgatatgcGAAAGCTGCTGTATATAGTGTTTGATATGGAGGTATTCATTTGATTAaatcttttctaaaaaaaacctaataaagtgaaaaaagattTCTGAAGAACTGAAGTGAGCATACACATGAACGTGATCTTCAGAAGCCAATGGAGCCAGTACCTAACAAACTTAGATCTGTGGAGGGAAACCAACCGGCATCCGGAGTGTTTCATCTTTCACATGCCTGTATTTCAGATCTCCTCCCACCACCGCCATCAACTGGAAGATTCAGTCAGAGAGCAGTGTCGGAATGTACGTAACTGGATTCAGTGTTTTTGAGGGTTTCATTGTCTGAAAgcatttgtttttcagccttttttttccatgacaGACTTGTCAGTTTCATTATGTGGCATGCGCATGAACTCGACAGTGAAAAACATGTTAGATAAAGtgttgtttttgcttgtttttccacTCTGGTTTTTCTGTATGTTGATGACATAAAATAAGTGTTTCTCTCAAAGCTTTGTCCATTGAAATGGGAGCATTGCACAGATGAGTAGATGAGATGTTTTACCCAAACTACCCAGCAGGATGGAGGATGACTGTATATAGCACTGTTATGGACTGGCAGCAAGGAAACAGGGATACAGCAAGGTTATGTTTGCTTTGTGTTTCTTCTAATAAAGGGAATCTGTCCtccataaaataatttatttaaaccaTGAAAATCATGTTATTACACTATAACACAACGCTTGCAATGCttgcccttttttttcctctttgtgaGATGCAGCCACTTTTGGTTGTCAATGAGGTGGCCTTTCCTGCCGTAGTCCTTAAATCCTTTAAAATGCCAAGACCAGTGTTTGTACCATCTAGTCATTGGCACCATTGTTCTGATTTTTAggtattattttagtttgtcgTTTACTCAACCCTTACCCTTTTTCTCATATTCTGGGGATAACTCATttgtacatatactgtatatcagaaGGCCCACATGCTcctgtctttttgtttgtttgtttttttgtgattcTCATTTTTCCTTTGCATCTCTTGGTGCTGTGTTTGATCAGCTTTCACCACTGTACAAACAGGAACAGAATTttgaacaaataataataataaaaaagatctgtatttgtatatacatGTGTCTGAGCAACTATGAATaatgattaaaggaaaaacaca

Function

symbol description
efna5 Enables ephrin receptor binding activity. Involved in several processes, including ephrin receptor signaling pathway; regulation of cytoskeleton organization; and regulation of focal adhesion assembly. Acts upstream of or within negative regulation of substrate adhesion-dependent cell spreading. Is anchored component of external side of plasma membrane.

NR:

description
ephrin-A5

GO:

id name namespace
GO:0007509 mesoderm migration involved in gastrulation biological_process
GO:0001756 somitogenesis biological_process
GO:0016020 membrane cellular_component

KEGG:

id description
K05462 EFNA; ephrin-A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026924443.2 True 4689 mRNA 0.42 5 15537879 15623188

Neighbor

gene id symbol gene type direction distance location
mfsd14bb LOC108265778,LOC108430319,LOC103035659,LOC106587031,LOC105890793 coding downstream 122429 15403229 ~ 15415450 (-)
LOC113528824 NA coding downstream 151349 15385297 ~ 15386530 (-)
zgc:101664 LOC108265953 coding downstream 158908 15377345 ~ 15378971 (-)
LOC113525393 NA coding downstream 161789 15364267 ~ 15376090 (-)
LOC113526253 LOC108265962 coding downstream 197210 15336107 ~ 15340669 (-)
fbxl17 fbxl17,LOC102776382,LOC107570989 coding upstream 53004 15676192 ~ 15899448 (-)
slc35d2 slc35d2 coding upstream 307129 15930317 ~ 15945987 (-)
ubox5 ubox5 coding upstream 341469 15964657 ~ 15968679 (-)
sfr1 NA coding upstream 349444 15972632 ~ 15976801 (-)
lzts3b lzts3,LOC108265122 coding upstream 356977 15980165 ~ 15991988 (-)
LOC117597848 NA non-coding downstream 65613 15465244 ~ 15472266 (-)
G133360 NA non-coding downstream 98209 15436985 ~ 15439670 (-)
G133356 NA non-coding downstream 112672 15424930 ~ 15425207 (-)
G133348 NA non-coding downstream 121839 15415810 ~ 15416040 (-)
G133321 nudt12 non-coding downstream 178198 15352385 ~ 15359681 (-)
G133568 NA non-coding upstream 157108 15780296 ~ 15808431 (-)
G133573 NA non-coding upstream 230812 15854000 ~ 15902309 (-)
G133576 NA non-coding upstream 281674 15904862 ~ 15905968 (-)
G133580 NA non-coding upstream 283094 15906282 ~ 15906602 (-)
G133584 NA non-coding upstream 298088 15921276 ~ 15922084 (-)
LOC113532496 NA other downstream 357683 15177787 ~ 15180196 (-)
sema6a sema6a,LOC107661172,LOC107663594,LOC106585847 other downstream 474657 15001347 ~ 15063222 (-)
ccser1 ccser1 other downstream 718151 14742482 ~ 14819728 (-)
grid2 grid2,LOC107751431,LOC107594506,LOC107711862,LOC107669587 other downstream 813196 14330361 ~ 14724683 (-)
atoh1a atoh1 other downstream 1213462 14321909 ~ 14324417 (-)
ccl27a NA other upstream 327074 15950262 ~ 15952679 (-)
rnf165b rnf165,rnf165b,LOC108265796,LOC108430336,LOC107726876,LOC107569673 other upstream 461881 16085069 ~ 16099247 (-)
ikbkb ikbkb other upstream 2425560 18048748 ~ 18084489 (-)
dynll1 dynll1,LOC103397138,LOC107559583 other upstream 2630397 18253585 ~ 18262218 (-)
ndufa4l2a LOC108434410,LOC108265249,LOC107678808,LOC107571901,LOC103362772 other upstream 4073210 19696398 ~ 19698530 (-)

Expression


Co-expression Network