G133584


Basic Information

Item Value
gene id G133584
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 15921276 ~ 15922084 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU157791
tgaacatgagacgatagatcagaatttcaactttcatttcctgatatatacatctagatgtgttaaacagcttaagAACATGACACTTTTgatggcagaccacccaatcaTTAGgcgagcaaaagtattggaacagatagtcttaaagtaaataacacttaatatttggctgcatatcacttgcttgcaataactgcatcaaaccagcgacccactgacatcatcaaactgttgcattcttcttttgtgatgcttttccaggcttgtaccgcagcttctttcaggtgttgtttgttttgggggtttcttccttcagtctcctcttcaggaggtgaaatgcatgctcagttgggttaaggtctggtgattgacttggtcagtctaaaaccttccacttctttcccctgatgaagtcctttgttgtgttggcagtgtgttttgggtcattgttttgctgcatgatgaagttcctcccaattagattggatgcatttctctgtaacctggcagacagaatgtttctgtagacttctggattcattctgctgctaccatcatgaattacatcatcaataaagatcagtgagcctgttccagaagcagccatgcaagcccaagcctttacactacctccaccatgacCAGTGAGCTCGTACATTTtgaatcatgagcagatcctttctttctgcaCACTTTGGTCATTTCATCACCttggtagaggttcatcttggttccagcccttttgtggctcatctctatttctttgtgaattccaatctagccttctgattcttactacTGATGAGTGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU157791 True 809 lncRNA 0.42 1 15921276 15922084

Neighbor

gene id symbol gene type direction distance location
fbxl17 fbxl17,LOC102776382,LOC107570989 coding downstream 21828 15676192 ~ 15899448 (-)
efna5b efna5,LOC108265807,LOC108430322,LOC100702629,LOC103397673,LOC106585191 coding downstream 298088 15537879 ~ 15623188 (-)
mfsd14bb LOC108265778,LOC108430319,LOC103035659,LOC106587031,LOC105890793 coding downstream 505826 15403229 ~ 15415450 (-)
LOC113528824 NA coding downstream 534746 15385297 ~ 15386530 (-)
zgc:101664 LOC108265953 coding downstream 542305 15377345 ~ 15378971 (-)
slc35d2 slc35d2 coding upstream 8233 15930317 ~ 15945987 (-)
ubox5 ubox5 coding upstream 42573 15964657 ~ 15968679 (-)
sfr1 NA coding upstream 50548 15972632 ~ 15976801 (-)
lzts3b lzts3,LOC108265122 coding upstream 58081 15980165 ~ 15991988 (-)
LOC117597774 fabp1,LOC108430333 coding upstream 81230 16003314 ~ 16005055 (-)
G133580 NA non-coding downstream 14674 15906282 ~ 15906602 (-)
G133576 NA non-coding downstream 15308 15904862 ~ 15905968 (-)
G133573 NA non-coding downstream 18967 15854000 ~ 15902309 (-)
G133568 NA non-coding downstream 112845 15780296 ~ 15808431 (-)
G133552 NA non-coding downstream 293328 15574831 ~ 15627948 (-)
G133664 smyd1b non-coding upstream 76924 15999008 ~ 16008327 (-)
G133665 NA non-coding upstream 78748 16000832 ~ 16001492 (-)
G133663 NA non-coding upstream 83674 16005758 ~ 16013551 (-)
G133676 NA non-coding upstream 122178 16044262 ~ 16044582 (-)
G133698 LOC108265827,LOC108430339 non-coding upstream 194680 16116764 ~ 16118223 (-)
LOC113532496 NA other downstream 741080 15177787 ~ 15180196 (-)
sema6a sema6a,LOC107661172,LOC107663594,LOC106585847 other downstream 858054 15001347 ~ 15063222 (-)
ccser1 ccser1 other downstream 1101548 14742482 ~ 14819728 (-)
grid2 grid2,LOC107751431,LOC107594506,LOC107711862,LOC107669587 other downstream 1196593 14330361 ~ 14724683 (-)
atoh1a atoh1 other downstream 1596859 14321909 ~ 14324417 (-)
ccl27a NA other upstream 28178 15950262 ~ 15952679 (-)
rnf165b rnf165,rnf165b,LOC108265796,LOC108430336,LOC107726876,LOC107569673 other upstream 162985 16085069 ~ 16099247 (-)
ikbkb ikbkb other upstream 2126664 18048748 ~ 18084489 (-)
dynll1 dynll1,LOC103397138,LOC107559583 other upstream 2331501 18253585 ~ 18262218 (-)
ndufa4l2a LOC108434410,LOC108265249,LOC107678808,LOC107571901,LOC103362772 other upstream 3774314 19696398 ~ 19698530 (-)

Expression


Co-expression Network