G132570


Basic Information

Item Value
gene id G132570
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 14260285 ~ 14260639 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU156616
ggatagtgcaattataaataaatcccttctattgtgtactatatggacaaatagtgcaattgtgcaaccaataaattcatcgcagtatttgcaagaggtccggctggttaaaatctatccactgtccactgatggagtcctgagtacgaagctgctcgtggcaactgcagccccaaagccactacagcaatcgcagtcccaagccattacagtacagctccccatatgtgatccccaagccatctccacagcccccaggtggcaccatccccagcaatccaaacagttcttcaggcagtccatatggggccacccccagcagcagcgagcgaactcaaccgatgagaactccaac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU156616 True 355 lncRNA 0.50 1 14260285 14260639

Neighbor

gene id symbol gene type direction distance location
tspan36 NA coding downstream 967 14255841 ~ 14259318 (-)
mapk4 LOC108265425,LOC108437594,LOC107724889 coding downstream 10515 14232957 ~ 14249770 (-)
ptch1 ptch1 coding downstream 133087 14076123 ~ 14127198 (-)
fancc fancc coding downstream 207162 14023205 ~ 14053123 (-)
rassf11 LOC108265542 coding downstream 388340 13868406 ~ 13871945 (-)
smarcad1a smarcad1,LOC108437598,LOC107751429,LOC107679902,LOC107568413,LOC107669586,LOC107574773 coding upstream 19599 14280238 ~ 14294312 (-)
trim36 trim36 coding upstream 561312 14821951 ~ 14842406 (-)
pggt1b pggt1b coding upstream 586455 14847094 ~ 14864522 (-)
LOC113529758 ccdc112,LOC108266012,LOC108265700 coding upstream 606295 14866934 ~ 14875918 (-)
fem1c fem1c,LOC106580179,LOC108265699,LOC107728259 coding upstream 622929 14883568 ~ 14887802 (-)
G132568 NA non-coding downstream 548 14259517 ~ 14259737 (-)
G132559 NA non-coding downstream 24249 14235555 ~ 14236036 (-)
G132557 NA non-coding downstream 25445 14234397 ~ 14234840 (-)
G132516 NA non-coding downstream 251817 13998466 ~ 14008468 (-)
G132504 NA non-coding downstream 271613 13987749 ~ 13988672 (-)
G133141 NA non-coding upstream 745940 15006579 ~ 15009703 (-)
G133184 NA non-coding upstream 872213 15132852 ~ 15133058 (-)
G133221 NA non-coding upstream 948828 15209467 ~ 15210863 (-)
G133320 NA non-coding upstream 1088977 15349616 ~ 15357434 (-)
G133321 nudt12 non-coding upstream 1091746 15352385 ~ 15359681 (-)
hsd17b3 hsd17b3 other downstream 75348 14178891 ~ 14184937 (-)
fance fance,LOC107668098,LOC107549969 other downstream 1241969 13007509 ~ 13018316 (-)
LOC117597846 NA other downstream 1257540 12998214 ~ 13002745 (-)
mapk14a LOC108265726,LOC107731233,LOC107668071,LOC100692416,LOC102779229,LOC107549963,LOC102206169,LOC101484752,LOC107591834,LOC104939458,LOC108442382,LOC103386138 other downstream 1306254 12937292 ~ 12954031 (-)
cpne5a cpne5a,LOC108265068,LOC108412993,LOC107550474,LOC107731272,LOC107668107,LOC107591830 other downstream 1366488 12810721 ~ 12893797 (-)
atoh1a atoh1 other upstream 61270 14321909 ~ 14324417 (-)
grid2 grid2,LOC107751431,LOC107594506,LOC107711862,LOC107669587 other upstream 69722 14330361 ~ 14724683 (-)
ccser1 ccser1 other upstream 481843 14742482 ~ 14819728 (-)
sema6a sema6a,LOC107661172,LOC107663594,LOC106585847 other upstream 740708 15001347 ~ 15063222 (-)
LOC113532496 NA other upstream 917148 15177787 ~ 15180196 (-)

Expression


Co-expression Network