mapk4 (LOC108265425,LOC108437594,LOC107724889)


Basic Information

Item Value
gene id mapk4
gene name LOC108265425,LOC108437594,LOC107724889
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 14232957 ~ 14249770 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930747.2
GGTGTCCAGCTCAACGGGCGGAACGTGACGTCACGCCGGGGGTTACCAGCACAGCAGAGCACAGCAGCGAGTTTGGAGAAAGAGAAGCTAAGGGGAAGAAAAGTCAGTTTGGAAGAAAATGCGGAAAAAGAAGCGCTTTGGAGAAGAGTTTTCCCAACACGAGGCTCACAGGCAGTCTTATCCCACAGGGGCAGATGTAATATGATGATTTGATAGGCGGAAAATTCCTGACGCAGAAGCAGAGCTGATAACAGGGAGCATACTGTGACCGCGATATCTCAGACTACACTGGTGCTACACAATAACGGATGAGAAATAGTGGGAAATATGAACATATTAAACCTGGGACAACATTCTGTTCATGGCACAGAGAAGCTTAGAGCCGTGAAGAAGCCTGAAGTGTAGTACGGTAAGCTCGCATCCTTCTCTTTGTACTTGTGTGACTGGATGCTGGGCCGAAACACTGCTCTTCTAGCACCTAACTCCGGCGTGTGAGCAGGACGCTTCATCTCACTCATTGTCCTGTTGACTCCGGTCACTTTgggctttcattcattcatttatgatAGGCGTTATAGTATATGATAAGCGTTATAGTATAATACAGCCTGTGATAGGCGTTATAACGTTGCCACGCACACAAAGGGAGAGAAGAAAGACAGCAGCCTGTAATTGTGTGGCCGCGCACAAAGCGACGAGTTTCTCCTGGCAGCACAGGTCCATCACTGAAACAGCAGCAGTCAGCCACAGCAGTGTGCATTATTTATGAAGTTGGAGCACTGGAATGCagaagTGAATGCACGGAAACGTTAACAGATAACTGCAAGCATGGAGCTGAAAAGCCAACGCAGAGCCCAAGATGCCTCCCTCAGGCCGCACCGAGCAACTCCTCTGTGAACAATGGCCAGGTGGAGCTCTTTTGCATTCAGATATGGCTTTGACCTGGGCAGTTACTTCCATGACCTTCGACCCCTGGGCACGGGTACATCCGGCCTGGTGTTGTCTGCCATTGACAGACGAAGCGGGCAACGAGTGGCAATTAAGAAGCTGGCACTGCGTGATGCCATGAGCATTAAACACGCACTGCGTGaagtaaaaatcacatgcaGGCTCCAGCATGAGAACATAGTAAGGGTGTATGAGGCACTGGGCCCAGGTGGCCAGCCTTTACCTCACAACATTGCCCAACTTACAGAGATCTACATTGTGCAAGAGCTTATGGAGACAGATCTGGCCCGGATATTGGAGCAGGGTCCCTTGCCAGTGGCCCATGCCACTTTGCTTTTTTACCAGCTTCTGCGAGGCCTCAAATTCATCCATTCAGCCAATGTGCTGCACCGTGACCTGAAGCCAGCCAACATCTTCATCAACACCGAGCAGATGCTGCTAAAGATAGGAGACTTTGGATTGGCACGCATTGTTGACCCACACTACTCACACAAGgGCTACCTCTCAGAGGGGATGGTGACTAAATGGTATCGCTCCCCTCGTCTGCTGCTCTCTCCGAACAACTACACCAAGGCCATCGACATGTGGGCCGCAGGCTGCATCCTGGCTGAGATGCTAACAGGCCGAATGCTTTTCGCAGGTGCACATGAGCTGGAACAGATGCAGCTAATTTTGGACACTGTGCCAGTGCTTAGAGAGGAGGACCGGCAGGAGCTGCTGAGAGTCATGCCCTCCTACGTCAACCACAACTGGGAGGTCAGGAGATCGCTGCAAGAGCTGCTTCCTGAGGTGGACGATGAAGCCATAGACTTCCTGGAGCAGATCTTGACCTTTAACCCAATGGATCGGCTGACAGCCGAAGCAGCTCTGTCTCACCCATTCCTCAGGCAATATTCCTGTCCTCAGGATGAGCCTGTGTCCCTCCAGCCCTTCCGCATAGAGGACGAGCTGGAGGACAGTCTGGTGAGCGAACATGGCCACTGGGACAGTCTTTCATCAGATCTGTGCTGGAAGCAGCAGGAGCAGTGTGGCTGCATACAGAGTGTGTCAGAAATGGGAGAGACTGAGGAGGATGAGGTCCAGAGAGATCCTCGGGCCAATTCCTCCTCCCTCATTGAGGAAGCGCTGGTGGACCCTGGAAAGCACTctcacagcagctcagcagAACGTTTTCTTGAGCAGTCGCATTCGTCTTTGGACAGGCTCTGCGGCCACTATATGGAGCTGGACTGCGGGCGCTCCTGTGACTACAAAGTGGGTTCTCCTTCATATTTGGATAAAATAGCATGGAGGGATGGGAAGCCCCAACACTATTCTGAGCCAAAGCTGATTCTGGACTTGTCTCATTGGAAGCGCAACACTCTCCCATCTCCCAAAGAGGGGGATCCTGAGCAGCTTAATGCTGAGGAACCTGCTGATTTGTTCCAGGAGATTTCACGCTGGGCAGCAAGCACACAACTAGGCCTTCATTCTCCCGGTTCACCTCAGGAACCTCCAACCTTACCAGGGTCTCCCCCTTTACCCGTTTCTCCTACCCTGCTTCCTCACTCACTCGCACAAAAGCAGGCAACTTCTCTACTGTACACTTCCAATGTTCTTCAGCATGGCAGGAGAAGTCCggcttctttcttttcttctcctccccCCCTGTTGCCTTCCTCTCCCTCTTCACCTACTCCAGGTTCATTAACCCcttttcaaaacaacaatgaaGTCTCGCCAATAGCTAGCGGAGAAGAACATTCTCACTTTGACCTGGATGTGTTCATCTCACAAGTAAAACGTGAGAACATTGTTACTTCTAAGCAGGGTAGCATTAGTACCTCTAGGATCTCAGAGCACAAGCCTTCCAGAACACAAACTTCAACGGAAGATGTGGTCAAATCTCAAAGTGTTCACAAAAAACAATGGTAGAAAGAGTGGAGAGTTGAGAAGACCTACCTTGAACTGGGTGACTGAATACCTGATGACTTAGTGCTGCTCTTGCAAGGTTGTGTAGTTTCATTGATGTTTGACATagaataatatacaaaacatttttgtgtgtttctaatGGCTCCTAAAATGTGGTCATACCTCAGAggaaaaattgagaaaaaaattcagctcCCTCGCTGTTCTCCTTAAGACTAAGTGTCTTACACAAATCAGTGCAAGGGCTTACTGCAGAATCCTCAGAAAGATGTTAGAGAATTCTAATGTGAGGCCTAAAATCTACAAGCATCACTTATACTTGATAACACCCACAATCAGAgtcccccaaaaaaaaaaaaaaaaaaaaaaaaaaaa

Function

NR:

description
PREDICTED: mitogen-activated protein kinase 4

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004707 MAP kinase activity molecular_function

KEGG:

id description
K06855 MAPK4_6; mitogen-activated protein kinase 4/6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930747.2 True 3237 mRNA 0.49 9 14232957 14249770

Neighbor

gene id symbol gene type direction distance location
ptch1 ptch1 coding downstream 105759 14076123 ~ 14127198 (-)
fancc fancc coding downstream 179834 14023205 ~ 14053123 (-)
rassf11 LOC108265542 coding downstream 361012 13868406 ~ 13871945 (-)
pdzd4 pdzd4,LOC108437581 coding downstream 422754 13795775 ~ 13810203 (-)
cacna1fb cacna1fb,LOC108265065,LOC108437577,LOC107668072,LOC107731232,LOC107695300,LOC107745766 coding downstream 622532 13560859 ~ 13610425 (-)
tspan36 NA coding upstream 6071 14255841 ~ 14259318 (-)
smarcad1a smarcad1,LOC108437598,LOC107751429,LOC107679902,LOC107568413,LOC107669586,LOC107574773 coding upstream 30468 14280238 ~ 14294312 (-)
trim36 trim36 coding upstream 572181 14821951 ~ 14842406 (-)
pggt1b pggt1b coding upstream 597324 14847094 ~ 14864522 (-)
LOC113529758 ccdc112,LOC108266012,LOC108265700 coding upstream 617164 14866934 ~ 14875918 (-)
G132516 NA non-coding downstream 224489 13998466 ~ 14008468 (-)
G132504 NA non-coding downstream 244285 13987749 ~ 13988672 (-)
G132477 NA non-coding downstream 284143 13945856 ~ 13948814 (-)
G132434 NA non-coding downstream 307757 13866991 ~ 13925200 (-)
G132435 NA non-coding downstream 379216 13849462 ~ 13853741 (-)
G132568 NA non-coding upstream 9747 14259517 ~ 14259737 (-)
G132570 NA non-coding upstream 10515 14260285 ~ 14260639 (-)
G133141 NA non-coding upstream 756809 15006579 ~ 15009703 (-)
G133184 NA non-coding upstream 883082 15132852 ~ 15133058 (-)
G133221 NA non-coding upstream 959697 15209467 ~ 15210863 (-)
hsd17b3 hsd17b3 other downstream 48020 14178891 ~ 14184937 (-)
fance fance,LOC107668098,LOC107549969 other downstream 1214641 13007509 ~ 13018316 (-)
LOC117597846 NA other downstream 1230212 12998214 ~ 13002745 (-)
mapk14a LOC108265726,LOC107731233,LOC107668071,LOC100692416,LOC102779229,LOC107549963,LOC102206169,LOC101484752,LOC107591834,LOC104939458,LOC108442382,LOC103386138 other downstream 1278926 12937292 ~ 12954031 (-)
cpne5a cpne5a,LOC108265068,LOC108412993,LOC107550474,LOC107731272,LOC107668107,LOC107591830 other downstream 1339160 12810721 ~ 12893797 (-)
atoh1a atoh1 other upstream 72139 14321909 ~ 14324417 (-)
grid2 grid2,LOC107751431,LOC107594506,LOC107711862,LOC107669587 other upstream 80591 14330361 ~ 14724683 (-)
ccser1 ccser1 other upstream 492712 14742482 ~ 14819728 (-)
sema6a sema6a,LOC107661172,LOC107663594,LOC106585847 other upstream 751577 15001347 ~ 15063222 (-)
LOC113532496 NA other upstream 928017 15177787 ~ 15180196 (-)

Expression


Co-expression Network