smarcad1a (smarcad1,LOC108437598,LOC107751429,LOC107679902,LOC107568413,LOC107669586,LOC107574773)


Basic Information

Item Value
gene id smarcad1a
gene name smarcad1,LOC108437598,LOC107751429,LOC107679902,LOC107568413,LOC107669586,LOC107574773
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 14280238 ~ 14294312 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026929131.2
TACTGGCGGGAAATAACCACATTTATGCAAatgggttttttcttttcttttctttttttctctcttcttggGTTTTTGAATTTCACGTCCGCTGGACATTGTGGCTTgtttagtattgttttttttatgacatgGATAAGGCACTCGTGACATCTTTTGTATTTTAGTAGAaactctgaagtgttttactgcttccTACGAACGCCAGAGTGGTAATATTTACCCGGCTAAATCTGTGTTGAAGCTGCTCTGTTGTCGCTCAGAATATAGCAATGAGTTTGTTTAACCTGGAAAGGTTCCGTTATCAGAAAGAGAAGACGGGTGGAAATGTGTCGTCGTCGTCGGTTAGTTCACCCAGACAAGAGCAGCGCAGACTAGTGAATAACTGCAGCTCGGATAAAGAGAATTACCCGGAACGCCGAGTGAAACCGGATGGCAGACGAGGAAGAGGGAAAGTCCCACGCCATGCACTGGAGGATGTGTCCTCTGATGATGAGGCCTGTAAGAAGGCAAGGGGTCCTACAATACATTCATCAGCGAGGAAAGCCAAAGAGTGTGAAAAGCAGACAAATCTCGAGATGGAAGATAAACTGAACAAGCTCCTGGAAATGTTCCCTCAGAGGAACAGAAGTGAATTGCTGGAGGTGATGGAGAGTACCAGCACGCTGGAGGGAGCTGTAGCATATTGTTTGGTGACCTACAAAGATAAAGATATATCCAAGACAAAAGGCGGAGCAACACACAGTGATGATGCTGAGATGCAGccaaagaagaggaggaaaaccGTGGAGCCAGATTCTGAGCCAGGGTCCGAAGAGGAGAACCAAGAGCCAAGCAGAGAAAAGCAAGAGGTTTTGGTGCACAAACTAAAAAAGAAACTTCCTACAATGGACAAAGCGGTACTGAGAGAAGTTCTGAGAGAGCATGAGTGGGATTTTGAAAATGCCTTGGGCTCTTTGCTCCTGTTTTCATCAGAATCAGACTCTAGCCCTAAAGAGGTCGAGAAGATGACGTCAAAACCTTCAAGTTATTCAAACTCATCAAAGAGCAGCCAGGAGAGCAGTGGAGATGGGAAACAAAAGCCAAATTCTTCTAGTCTGACAAGATGGCTATCTGCTGTATCGAGTAAATCTCCTTCAAGACCACAGTCCTCCTCCAATAGATCAACCTCAAAAGAAAGCAAAACGGTCAGTCATAAGCCTGAGAGAGCAAAAGCAGATAAGTTAAAAGCAGTACAAAACAAAGACTCGGATGACTCCGAGCTTGATAGTGAGGCTGAGGATGGGTCCGATGAATTTGACTTGGAAGGTGAGGACGATAGCTTTGATCCTGGGGTCCAGAAGCAGATCTTGCAGTTTTTCCAGGAGGCATCAATGGATGAACTGACTTTGATATCTGGCTGCTCGTTGAAAAAAGCCCAGAAGATTATTTCACTGAGACCATTCAACACATGGAAAGATGTGAATGAGCAGTTCTATAAGGATAATGGCTTGTCTATGGAGTTGGTGCATGGCTGTAAGAAGGTGCTGAAGGAAAGGCAGGTACTGAAGCAGCTCATGAACAAGTGTGAGAGCATAGCCAGGAAGATGACCAAAGACGTAACCCGGGTCATAGAAAACGGCATGGGCTCCATGAAACAGCCAACCACCCTCAACAGCAAGTTGAAATTACAGCCATATCAGCTGATAGGCTTGAAGTGGCTTATTCTCTTACACCAGCACAATCTCAGTGGGATCCTGGCTGATGAGATGggcTTAGGAAAGACGATTCAGGCCATTTCTTTTTTGGCTCATCTTTATCAGAAGGGGATTAAAGGCCCTCACCTCATCACTGTACCCTCTTCCACAGTGGATAACTGGGTAAGGGAGCTAGAGCTGTGGTGCCCCAGCCTGAAGGTGATTGTTTATTATGGCTCTGTAGAGGACCGTAAATACCTCCGTCATGATATTCTCAACAACCAAGTGGAGTTCAATGTTATAGTGTCTACATATAACTTAACAATAGGCAATGAAAGTGACCGCAGTCTTTTCCGCAAGTTAAAGTTGCAGTGTGCTGTGTTTGATGAGGGTCACATGTTGAAGAACATGAACTCGCTACGCTACCGCCATCTCATGGCCATTAATGCTGAACAGAGATTGTTGCTCACTGGAACACCTTTACAAAACAACCTTCTGGAACTCATATCTCTGCTCAACTTTATTATGCCTTCCATGTTTTCCAGCAGTACTTCACAGATTTCCAAGATGTTCTCCACGAAATCATCAGAAGAGGAAAGTAGTTTCCATAAAGAAAGAATCGCACAAGCCAAGCTCATCATGAAGCCCTTCATCTTGAGACGAGTCAAgagtgagGTGCTGAAAGAACTACCACCCAAGGTGGAGAAGATCGAAATGTGTCCCATGAGTGATGCTCAACAGCAGCTCTATGATGGTCTCTTCAGTAGGCTCAAGAACACTGTCAATGGAGAGAaGAGACAGCTCAGTAATGTGATGATGCAGCTAAGAAAGATGGCCAATCATCCACTGTTGCACCGGCAGTACTATACCACAGAGAAGCTGGCAGCCATGAGCCGAGCCATGCTGAAGGAACCAACACATTTTGATGCAGACCCTGCACTGATCCAGGAAGACATGGAGGTGATGTCAGACTTTGAGCTGCATAAGCTTTGTAAGGAATACAGCTCCATCTCCAGGTTTCAACTGGACAAAGAGCTCCTTCTGGACTCTGGAAAGTTTTCCCTGCTTACCAAGTTATTAGCCAAGCTCAAAGAGAAGGGTGACAGAGCAGTGCTGTTTAGCCAGTTCACCATGATGCTGGACATTGTGGAGATTCTGCTGAAACACCTTGGTCACCAGTATGTTCGGCTGGATGGCTCCACACCTATGGCAGAAAGaaTTGGCCTCATAGACAAATATAACACAGACCCTGAAATATTTGTCTTCCTTCTGTCAACGCGTGCTGGTGGCCAGGGGATCAACCTGGCCTCTGCTAATGTAGTGATTCTTCATGATATTGACTGCAATCCTTTCAATGATAAACAAGCAGAGGACCGCTGTCATCGAATGGGGCAGAGAAGGACTGTGCAGGTTATAAAACTGATTAGTAAAGATTCCATAGAGGCCTGCATGCTTCGTTTAGGGCAGGAGAAACTCAAACTTGAACAAGACATGACTACTGATGAAGGTGAAGAGGGCTCCATGTCAGAGGATGTGGCTGAGCTGTTAAAAGCATCACTGGGCCTTTAACAGAAAAGTGATTAGTATAGATACATGCAGCACAGCTAAATGGCTGACCCAATAAATACACTGACTACATTTATtcttatgaataaatattaatgtgcaCTTGCTAGCCATATAGGCGGCAACAAGTAGCTGTGTCGCTTCATGTTTGACTGAAAACTGGTCACTTCATACTTCACTGACAGTGTTTGCTCGAGTACTGTTCTGTTTCATATGCTCATTTTGGCTCAGGTGGAAAGTATAGCACTGCCTAGTTGCATCCAACTTCAGGTTTAAGATAGCAACATTTGTGTCAGAAGCTTATTAGTCTTATTAGCCCCCCCATAACTGTACTGTGGTTGTGTCTGTGTTATATATTGTTGTACATGTTACTGTCAAATAAAGGCACTTTTTATAGTCTA

Function

symbol description
smarcad1 Enables DNA binding activity. Involved in several processes, including DNA double-strand break processing; chromatin organization; and chromosome separation. Located in nuclear replication fork; nucleoplasm; and site of double-strand break. Implicated in BASAN syndrome and adermatoglyphia.

NR:

description
PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1

GO: NA

KEGG:

id description
K14439 SMARCAD1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026929131.2 True 3643 mRNA 0.44 23 14280238 14294312

Neighbor

gene id symbol gene type direction distance location
tspan36 NA coding downstream 20920 14255841 ~ 14259318 (-)
mapk4 LOC108265425,LOC108437594,LOC107724889 coding downstream 30468 14232957 ~ 14249770 (-)
ptch1 ptch1 coding downstream 153040 14076123 ~ 14127198 (-)
fancc fancc coding downstream 227115 14023205 ~ 14053123 (-)
rassf11 LOC108265542 coding downstream 408293 13868406 ~ 13871945 (-)
trim36 trim36 coding upstream 527639 14821951 ~ 14842406 (-)
pggt1b pggt1b coding upstream 552782 14847094 ~ 14864522 (-)
LOC113529758 ccdc112,LOC108266012,LOC108265700 coding upstream 572622 14866934 ~ 14875918 (-)
fem1c fem1c,LOC106580179,LOC108265699,LOC107728259 coding upstream 589256 14883568 ~ 14887802 (-)
tmed7 LOC108265697,LOC102200599,LOC101168626,LOC100701005,LOC107084449 coding upstream 594003 14888315 ~ 14898745 (-)
G132570 NA non-coding downstream 19599 14260285 ~ 14260639 (-)
G132568 NA non-coding downstream 20501 14259517 ~ 14259737 (-)
G132559 NA non-coding downstream 44202 14235555 ~ 14236036 (-)
G132557 NA non-coding downstream 45398 14234397 ~ 14234840 (-)
G132516 NA non-coding downstream 271770 13998466 ~ 14008468 (-)
G133141 NA non-coding upstream 712267 15006579 ~ 15009703 (-)
G133184 NA non-coding upstream 838540 15132852 ~ 15133058 (-)
G133221 NA non-coding upstream 915155 15209467 ~ 15210863 (-)
G133320 NA non-coding upstream 1055304 15349616 ~ 15357434 (-)
G133321 nudt12 non-coding upstream 1058073 15352385 ~ 15359681 (-)
hsd17b3 hsd17b3 other downstream 95301 14178891 ~ 14184937 (-)
fance fance,LOC107668098,LOC107549969 other downstream 1261922 13007509 ~ 13018316 (-)
LOC117597846 NA other downstream 1277493 12998214 ~ 13002745 (-)
mapk14a LOC108265726,LOC107731233,LOC107668071,LOC100692416,LOC102779229,LOC107549963,LOC102206169,LOC101484752,LOC107591834,LOC104939458,LOC108442382,LOC103386138 other downstream 1326207 12937292 ~ 12954031 (-)
cpne5a cpne5a,LOC108265068,LOC108412993,LOC107550474,LOC107731272,LOC107668107,LOC107591830 other downstream 1386441 12810721 ~ 12893797 (-)
atoh1a atoh1 other upstream 27597 14321909 ~ 14324417 (-)
grid2 grid2,LOC107751431,LOC107594506,LOC107711862,LOC107669587 other upstream 36049 14330361 ~ 14724683 (-)
ccser1 ccser1 other upstream 448170 14742482 ~ 14819728 (-)
sema6a sema6a,LOC107661172,LOC107663594,LOC106585847 other upstream 707035 15001347 ~ 15063222 (-)
LOC113532496 NA other upstream 883475 15177787 ~ 15180196 (-)

Expression


Co-expression Network