tspan36


Basic Information

Item Value
gene id tspan36
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 14255841 ~ 14259318 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930003.2
GAATGCCTGGCAACCTTGAAGGCCAAACAAGCGTCGATATAGAGGCGTGTAAAGGCTGTGTTCGTttacagagcagagcagagcaggtTATTTAGACAGGCATAAACTTCAGGTTTATTTTTACGGGTAACCTACAGCAGACATGGACTGCGGAATTTTAGTATCTAAGACCGTCCTTTTGCTCATCAGTCTAATATTTTGGGCTGCAGGAGCGGCTCTTGCATACGTCGGCTCTTTTGTCATAAACAGCTACAAGACTTTTGACGACTTCAGAGTTGACAAATACACCGTTATCCCTGCAACCATCATTCTTGGTTTGGCCGTGGTGATGTTCATCATAGGTACAATTGGCTGCTGCGCAACGCTGAGGGAGTCTAAAATCGGCCTAGGCTTTTTCCTACTCATCCTTTTTCTGATATTTGCTGCGGAGGTCGCTGCCATTGTGTTTGGCTTCATCTACAAAAGCAGGATAAGTGGAGACTTGGAAAAACCAATGATTGAAGTTTTTGAGAAGTACAATGGCGATAATTCTGAAAGCCGGGCAGTGGATTACTTGCAGACTCAGCTGGAATGTTGTGGGGTGCACAACTACACTGACTGGTTAAAATGGCAATGGTTTATTCATAACCATACTTTGCCTCTGTCATGCTGCAAAGCAAACATCACCACCTGCACGATCGACCACCCAGAGCTGTTGAATAAAAGCGGATGTGAAACTAAACTGGAGCAGCTGCTGCAGCGTGTGCTGATTTATGCCATATTGGTCATCTTGGGATTCGCCATCATAAAGttCCTTGGCATGCTCAGCGTTTGTGTGATCGGCTGCCGAAGCTCCAGAAATGACTACCAGCCATTATATGCATAAAAGGTTCGGTAAAGCGCTTCAGCTTCTTCGTTATCAATATAGAAAAAAAGTCTGACGTTTCTCATAACCTCAGCCACTTCACACATGCttgttttttgtcctttttactGGTACAGTATGTTGAGTTTTATTGTAGTTTTTGAGTAGATAAGCGAGAATCTCACTAAAGTATAGGGAAATTGTAGGAAGCAACTCATTAATTGCAAAAACCTTTGTGAAAGgacaaaaatgcagcattttcttttcttttttttaggtgACATTCCTACCTTTTGGTTGACTGTTGTGCCTTAGACAGTGCACCTTACTATGTGTTTTTCCCTTAACTTTCCTGAATCACACTAGCATGTACTTTCCTATGATTTTAAATTCAAACAGTAAAGGGAGTTCTACCAGTTGCCTGAACTGACTTCTTAAAAAATTTTATAAGCACTGAATGGATTGTGATTTGAAGTTTAAGTGGATAAAAGTTTTAGTCTATaagtgtttatgtaaatgtCTAAGTATGTAACACACTGTATGTAATgatgcatttttcatgtttagTTGTTGAACTGGTCATGAtttagtgaaaatatttttgctgcAAAAGCTCTTAAGCATCAGAGATCACATGTTAAATGCTGAGTTTTAATTGCGTTgacaatgaaataaattaaataaaagtcttaaaTTGAA
>XM_026930013.2
GAATGCCTGGCAACCTTGAAGGCCAAACAAGCGTCGATATAGAGGCGTGTAAAGGCTGTGTTCGTttacagagcagagcagagcaggtTATTTAGACAGGCATAAACTTCAGGTTTATTTTTACGGGTAACCTACAGCAGACATGGACTGCGGAATTTTAGTATCTAAGACCGTCCTTTTGCTCATCAGTCTAATATTTTGGGCTGCAGGAGCGGCTCTTGCATACGTCGGCTCTTTTGTCATAAACAGCTACAAGACTTTTGACGACTTCAGAGTTGACAAATACACCGTTATCCCTGCAACCATCATTCTTGGTTTGGCCGTGGTGATGTTCATCATAGGTACAATTGGCTGCTGCGCAACGCTGAGGGAGTCTAAAATCGGCCTAGGCTTTTTCCTACTCATCCTTTTTCTGATATTTGCTGCGGAGGTCGCTGCCATTGTGTTTGGCTTCATCTACAAAAGCAGGATAAGTGGAGACTTGGAAAAACCAATGATTGAAGTTTTTGAGAAGTACAATGGCGATAATTCTGAAAGCCGGGCAGTGGATTACTTGCAGACTCAGCTGGAATGTTGTGGGGTGCACAACTACACTGACTGGTTAAAATGGCAATGGTTTATTCATAACCATACTTTGCCTCTGTCATGCTGCAAAGCAAACATCACCACCTGCACGATCGACCACCCAGAGCTGTTGAATAAAAGCGGATGTGAAACTAAACTGGAGCAGCTGCTGCAGCGTGTGCTGATTTATGCCATATTGGTCATCTTGGGATTCGCCATCATAAAGttCCTTGGCATGCTCAGCGTTTGTGTGATCGGCTGCCGAAGCTCCAGAAATGACTACCAGCCATTATATGCATAAAAGgtgACATTCCTACCTTTTGGTTGACTGTTGTGCCTTAGACAGTGCACCTTACTATGTGTTTTTCCCTTAACTTTCCTGAATCACACTAGCATGTACTTTCCTATGATTTTAAATTCAAACAGTAAAGGGAGTTCTACCAGTTGCCTGAACTGACTTCTTAAAAAATTTTATAAGCACTGAATGGATTGTGATTTGAAGTTTAAGTGGATAAAAGTTTTAGTCTATaagtgtttatgtaaatgtCTAAGTATGTAACACACTGTATGTAATgatgcatttttcatgtttagTTGTTGAACTGGTCATGAtttagtgaaaatatttttgctgcAAAAGCTCTTAAGCATCAGAGATCACATGTTAAATGCTGAGTTTTAATTGCGTTgacaatgaaataaattaaataaaagtcttaaaTTGAA

Function

NR:

description
tetraspanin-3-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K17293 TSPAN3; tetraspanin-3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930003.2 True 1543 mRNA 0.40 7 14255841 14259318
XM_026930013.2 False 1290 mRNA 0.41 8 14255841 14259318

Neighbor

gene id symbol gene type direction distance location
mapk4 LOC108265425,LOC108437594,LOC107724889 coding downstream 6071 14232957 ~ 14249770 (-)
ptch1 ptch1 coding downstream 128643 14076123 ~ 14127198 (-)
fancc fancc coding downstream 202718 14023205 ~ 14053123 (-)
rassf11 LOC108265542 coding downstream 383896 13868406 ~ 13871945 (-)
pdzd4 pdzd4,LOC108437581 coding downstream 445638 13795775 ~ 13810203 (-)
smarcad1a smarcad1,LOC108437598,LOC107751429,LOC107679902,LOC107568413,LOC107669586,LOC107574773 coding upstream 20920 14280238 ~ 14294312 (-)
trim36 trim36 coding upstream 562633 14821951 ~ 14842406 (-)
pggt1b pggt1b coding upstream 587776 14847094 ~ 14864522 (-)
LOC113529758 ccdc112,LOC108266012,LOC108265700 coding upstream 607616 14866934 ~ 14875918 (-)
fem1c fem1c,LOC106580179,LOC108265699,LOC107728259 coding upstream 624250 14883568 ~ 14887802 (-)
G132559 NA non-coding downstream 19805 14235555 ~ 14236036 (-)
G132557 NA non-coding downstream 21001 14234397 ~ 14234840 (-)
G132516 NA non-coding downstream 247373 13998466 ~ 14008468 (-)
G132504 NA non-coding downstream 267169 13987749 ~ 13988672 (-)
G132477 NA non-coding downstream 307027 13945856 ~ 13948814 (-)
G132568 NA non-coding upstream 199 14259517 ~ 14259737 (-)
G132570 NA non-coding upstream 967 14260285 ~ 14260639 (-)
G133141 NA non-coding upstream 747261 15006579 ~ 15009703 (-)
G133184 NA non-coding upstream 873534 15132852 ~ 15133058 (-)
G133221 NA non-coding upstream 950149 15209467 ~ 15210863 (-)
hsd17b3 hsd17b3 other downstream 70904 14178891 ~ 14184937 (-)
fance fance,LOC107668098,LOC107549969 other downstream 1237525 13007509 ~ 13018316 (-)
LOC117597846 NA other downstream 1253096 12998214 ~ 13002745 (-)
mapk14a LOC108265726,LOC107731233,LOC107668071,LOC100692416,LOC102779229,LOC107549963,LOC102206169,LOC101484752,LOC107591834,LOC104939458,LOC108442382,LOC103386138 other downstream 1301810 12937292 ~ 12954031 (-)
cpne5a cpne5a,LOC108265068,LOC108412993,LOC107550474,LOC107731272,LOC107668107,LOC107591830 other downstream 1362044 12810721 ~ 12893797 (-)
atoh1a atoh1 other upstream 62591 14321909 ~ 14324417 (-)
grid2 grid2,LOC107751431,LOC107594506,LOC107711862,LOC107669587 other upstream 71043 14330361 ~ 14724683 (-)
ccser1 ccser1 other upstream 483164 14742482 ~ 14819728 (-)
sema6a sema6a,LOC107661172,LOC107663594,LOC106585847 other upstream 742029 15001347 ~ 15063222 (-)
LOC113532496 NA other upstream 918469 15177787 ~ 15180196 (-)

Expression


Co-expression Network