G132557


Basic Information

Item Value
gene id G132557
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 14234397 ~ 14234840 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU156603
CTTTGACCTAATTTACacaaaatctgtatttttgagTCTTGTATTTAGGGTTCTGATTTTTCCCCTAGcatgtttaaaacaaagaaaaggcaGTGTGctgaatacagaaaaaaagtaatttcatttaatgtaactacTATCATGCATAGAATTCAAAcatacaaaattcatattcagatatttCTGTCTGCTTCCAAGCTCTGTAAAGCTGTAGTGTATCCAGAGGTGTGTCCATATTTAGCTGTGCTAAAGTGAATAATGGTTTATCTAATGAACGGCCTAGACAGCAACTGCAATGTTTTATCAACAAAAAATGTCACCATGCTTGTTAGCTTCCacatttgttttgaaatgtttatcATTTCATCAATTCATTGTTTATCCAAAACTGTAGGCCTTTAAAGTTATCATAGTGAAAAACACTGGCCTACAATGGCCagcaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU156603 True 444 lncRNA 0.33 1 14234397 14234840

Neighbor

gene id symbol gene type direction distance location
ptch1 ptch1 coding downstream 107199 14076123 ~ 14127198 (-)
fancc fancc coding downstream 181274 14023205 ~ 14053123 (-)
rassf11 LOC108265542 coding downstream 362452 13868406 ~ 13871945 (-)
pdzd4 pdzd4,LOC108437581 coding downstream 424194 13795775 ~ 13810203 (-)
cacna1fb cacna1fb,LOC108265065,LOC108437577,LOC107668072,LOC107731232,LOC107695300,LOC107745766 coding downstream 623972 13560859 ~ 13610425 (-)
tspan36 NA coding upstream 21001 14255841 ~ 14259318 (-)
smarcad1a smarcad1,LOC108437598,LOC107751429,LOC107679902,LOC107568413,LOC107669586,LOC107574773 coding upstream 45398 14280238 ~ 14294312 (-)
trim36 trim36 coding upstream 587111 14821951 ~ 14842406 (-)
pggt1b pggt1b coding upstream 612254 14847094 ~ 14864522 (-)
LOC113529758 ccdc112,LOC108266012,LOC108265700 coding upstream 632094 14866934 ~ 14875918 (-)
G132516 NA non-coding downstream 225929 13998466 ~ 14008468 (-)
G132504 NA non-coding downstream 245725 13987749 ~ 13988672 (-)
G132477 NA non-coding downstream 285583 13945856 ~ 13948814 (-)
G132434 NA non-coding downstream 309197 13866991 ~ 13925200 (-)
G132435 NA non-coding downstream 380656 13849462 ~ 13853741 (-)
G132559 NA non-coding upstream 715 14235555 ~ 14236036 (-)
G132568 NA non-coding upstream 24677 14259517 ~ 14259737 (-)
G132570 NA non-coding upstream 25445 14260285 ~ 14260639 (-)
G133141 NA non-coding upstream 771739 15006579 ~ 15009703 (-)
G133184 NA non-coding upstream 898012 15132852 ~ 15133058 (-)
hsd17b3 hsd17b3 other downstream 49460 14178891 ~ 14184937 (-)
fance fance,LOC107668098,LOC107549969 other downstream 1216081 13007509 ~ 13018316 (-)
LOC117597846 NA other downstream 1231652 12998214 ~ 13002745 (-)
mapk14a LOC108265726,LOC107731233,LOC107668071,LOC100692416,LOC102779229,LOC107549963,LOC102206169,LOC101484752,LOC107591834,LOC104939458,LOC108442382,LOC103386138 other downstream 1280366 12937292 ~ 12954031 (-)
cpne5a cpne5a,LOC108265068,LOC108412993,LOC107550474,LOC107731272,LOC107668107,LOC107591830 other downstream 1340600 12810721 ~ 12893797 (-)
atoh1a atoh1 other upstream 87069 14321909 ~ 14324417 (-)
grid2 grid2,LOC107751431,LOC107594506,LOC107711862,LOC107669587 other upstream 95521 14330361 ~ 14724683 (-)
ccser1 ccser1 other upstream 507642 14742482 ~ 14819728 (-)
sema6a sema6a,LOC107661172,LOC107663594,LOC106585847 other upstream 766507 15001347 ~ 15063222 (-)
LOC113532496 NA other upstream 942947 15177787 ~ 15180196 (-)

Expression


Co-expression Network