G133914


Basic Information

Item Value
gene id G133914
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 16448493 ~ 16448798 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU158202
agacagttctctggtcttcatgttggtttatccttgtTAACAACAAATTAAGTCTTTACAGGTGAAACCCAAACATTTGATTCCTTCCTCCGGCCTGTGCAgggagtttgcatgttttccctgtgcttcaggggtttcctccaggtcctccggtttccttccccttcctccaaagacatgtgttgtaggctgattggaaTCTCTAaattgtttgttgtgtttttgtgtttgtgcacgattgtgccctgcaatggattggcaccctgtccatggtgtcccctgggataggctccaggctcccccgtg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU158202 True 306 lncRNA 0.48 1 16448493 16448798

Neighbor

gene id symbol gene type direction distance location
pptc7a pptc7,pptc7a,LOC107552188,LOC107553043,LOC107671007,LOC107699657,LOC103044306,LOC108430358 coding downstream 1735 16439215 ~ 16446758 (-)
srrd srrd coding downstream 24907 16419042 ~ 16423586 (-)
cldn5a cldn5,LOC107670982 coding downstream 122768 16323640 ~ 16325725 (-)
ufd1l ufd1l coding downstream 142928 16302207 ~ 16305565 (-)
tmem127 tmem127,LOC107552193,LOC107713035,LOC106579884,LOC106585551 coding downstream 154791 16289058 ~ 16293702 (-)
LOC113524481 cit,LOC108265536 coding upstream 178616 16627414 ~ 16683882 (-)
rab35b rab35,rab35b,LOC108430363,LOC107699662,LOC107671023 coding upstream 290530 16739328 ~ 16748224 (-)
gcn1 gcn1,LOC107552181 coding upstream 304023 16752821 ~ 16810992 (-)
pxnb pxn,pxnb,LOC108265409,LOC106529512,LOC102314602,LOC107754409,LOC107552183,LOC102212913 coding upstream 372349 16821147 ~ 16855885 (-)
ctu1 ctu1 coding upstream 401327 16850125 ~ 16855666 (-)
G133810 NA non-coding downstream 176286 16271634 ~ 16272207 (-)
G133720 NA non-coding downstream 288053 16159864 ~ 16160440 (-)
G133697 NA non-coding downstream 323756 16120357 ~ 16124737 (-)
G133698 LOC108265827,LOC108430339 non-coding downstream 330270 16116764 ~ 16118223 (-)
G133676 NA non-coding downstream 403911 16044262 ~ 16044582 (-)
G133915 NA non-coding upstream 74 16448872 ~ 16449270 (-)
G133916 NA non-coding upstream 928 16449726 ~ 16450486 (-)
G134122 NA non-coding upstream 247138 16695936 ~ 16696673 (-)
G134211 NA non-coding upstream 400429 16849227 ~ 16849490 (-)
G134221 NA non-coding upstream 491989 16940787 ~ 16940991 (-)
rnf165b rnf165,rnf165b,LOC108265796,LOC108430336,LOC107726876,LOC107569673 other downstream 349246 16085069 ~ 16099247 (-)
ccl27a NA other downstream 495814 15950262 ~ 15952679 (-)
LOC113532496 NA other downstream 1268297 15177787 ~ 15180196 (-)
sema6a sema6a,LOC107661172,LOC107663594,LOC106585847 other downstream 1385271 15001347 ~ 15063222 (-)
ccser1 ccser1 other downstream 1628765 14742482 ~ 14819728 (-)
ikbkb ikbkb other upstream 1599950 18048748 ~ 18084489 (-)
dynll1 dynll1,LOC103397138,LOC107559583 other upstream 1804787 18253585 ~ 18262218 (-)
ndufa4l2a LOC108434410,LOC108265249,LOC107678808,LOC107571901,LOC103362772 other upstream 3247600 19696398 ~ 19698530 (-)
LOC113533329 LOC108265714 other upstream 3524766 19973564 ~ 20005390 (-)
G135737 NA other upstream 3591499 20040297 ~ 20040688 (-)

Expression


Co-expression Network