pptc7a (pptc7,pptc7a,LOC107552188,LOC107553043,LOC107671007,LOC107699657,LOC103044306,LOC108430358)


Basic Information

Item Value
gene id pptc7a
gene name pptc7,pptc7a,LOC107552188,LOC107553043,LOC107671007,LOC107699657,LOC103044306,LOC108430358
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 16439215 ~ 16446758 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026910763.2
CGCTGTCCATGAAAGGAAAAACTATTCGAAAGAGTTGCGTAAGAGTGACGTCAGCGCAGTCACAAGACACTAACTAGTTTCGCtgtagttagctagctggctaactgtGGTGTTATGTAACTAGTTAATAAGGTACAGAGAACACGGAAGAGctgtgtgatgaagctgaaCAGCGGAATGGAAACTCTGATATTtggaaatgtttagaaaattaaaGACACATTTGGGACAAAATGTGGAGGACAGATGaatgtaaagagtgtttattttatcaccggtgtgagagagagagagagagagagacagacagacacagacttACAGAGCAGCAGCGGTGTGTATGTGAAGTTTGATTAGTCCTTCTTCTTTCAGTCAGCAGCTCACAGCTCGCTCTCCTGTCCTCAGCAGTCAGTGAAACAGGCATTAAGCGGGCTAAGGCCCGGACATTACAGCTCGGTTTGGGCTGGAGCTCGGGGGATGTTGTCCGTGCTCTCCTGCGGTAGACTGCTGGCTCGGGCTGTCATCAGCGGCCTTTCCCAAACAGACAGCCGCGACTACAGCCTCATATCGGCTAGCTTTGGATATGGCAAAGATTTCCGGAAGggtattttaaagaaatgcatGTGCTACGGGGATGACGCCTGGTTCATTGCGCGGCACAGATCTGCTGATGTTTTAGGTGTGGCTGATGGAGTGGGTGGCTGGCGGGATTATGGAGTAGATCCTTCTCTGTTTTCTGGAACCCTCATGAGGACATGTGAGAGATTGGTCAAGGAAGGCCACTTTGTGCCTAGTAACCCTGTGGGAATCCTCACTAAGAGTTATTACGAGCTCCTTCAGAACAAAGTACCTCTATTAGGGAGTAGCACAGCCTGTATAGTGATGCTGGACAGACAGAGTCACCGGCTTCACACTGCAAATTTGGGAGATTCTGGCTTCCTGGTCGTTCGAGGAGGGGAAGTAGTGCACAGGTCTGATGAGCAGCAGCACTATTTCAACACACCCTTCCAGCTTTCAATCGCCCCTCCAGAGGCAGAGGGCTCTGTTCTTAGTGACAGTCCTGAAGCTGCAGACAGCACATCCTTCGATGTCCAGTTAGGAGACATCATCCTCACAGCCACAGATGGGCTCTTTGACAACATGCCTGACTATATGATCTTACAAGAACTCAAAAAGCTCAAGAACACCAATTATGAGAGCATCCAGCAGACAGCCAAGAGTATTGCAGAACAGGCCCATGTTTTAGCATATGACCCCAATTACATGTCACCTTTTGCACAGTTTGCTTGTGACAATGGACTGAATATAAGAGGAGGAAAGCCAGATGACATCACTGTCCTACTGTCTATCGTTGCTGAGTACACAGACTGATGTGACTGCAGTGCTCGACTTGTCCTCTTCATTAGAATGGTCATTGATTCCTGCTGGCAGGATGGgcaaaaagttttcatttctttgccaAGGACCAAACCCTGATCCTCTTCATTGGATTTGAACATATCTTGTCTCACTCTGGCTTTTACAGCTTCATGCAAAccatttaaaatgagaaaaattataaatattaaaacaattgGAATTGTTTTATGATGGGTTAGACCAATCCGTTGAATCTTGTAGTGCTCTCATTATAAACATAGCATGCAGTAACCCTTTTTGACCAAGACGTAATATAAAAATGAGTAGCAATGACATTAACCCCTATGCAGGAATATGCAACCTGAAATTAACCAGTGAGAATATTAACATTGTTCCAGGAGGGAGATGTGTGGAGATGATCATGAAAAATTGCATCATTATGCCAGGAGAGGCCTATCTGACCTGAGACAAGGTAGGACTCTAAGAAGTCATGATACCAATAGCAAACCCATAGGACAGCAACTCATTATGAATCTctgaaaatggccagattggccATAAGGTATCAATttaaaaagccatttttaaCAAGCTTGTGTATATCTTTAGTCAGTCTGGCTGTAATCTGGCTCTGCATTGATGTATAACACCACAATTCAGGAACCAGGGTAAAGAGGAGTTGTACTAACATGGATAAGGAGACAATTTCAGTGTGTTAAgttttttgtttacttgtttctctctctctcttttttttttttttaaattaatatattaaatattgtattagAGTAGAGTTTCTCCACACAATATGGGTTGTTAGGTAATAATGCAAGAGCCTGCAAGGTTTTATCTTATGAGGAAAAAACCCTTTCATGCTCTGTTAACCACTTTGAAGATTCACATGctttgtgtgtgcacacatgtgGACTTGAgcgatatactgtatgtaaaaggTAAATACAAACTTGCTGTATATCTGTGTATGCATTAGGAAACATACCATTGTATATGAATATAACTTATATTTTTTAAGTGTaaattgtgtgttaaaatgtttcttcctcagctttttgtaattgtaattttaaatattccttGAGGTGTACATTGTTAATGCACAGGGCAAATGCTAGCATCTCTGAATGCCTTAAGCAGATGTGTGTCATATGATCTAATAAAGGTCTATTTTTCTAACTGGG

Function

symbol description
pptc7a Predicted to enable metal ion binding activity; protein serine phosphatase activity; and protein threonine phosphatase activity. Predicted to be located in mitochondrial matrix. Predicted to be active in mitochondrion. Orthologous to human PPTC7 (protein phosphatase targeting COQ7).
pptc7 Enables protein serine/threonine phosphatase activity. Involved in peptidyl-serine dephosphorylation and regulation of ubiquinone biosynthetic process. Located in mitochondrial matrix.

NR:

description
PREDICTED: protein phosphatase PTC7 homolog

GO:

id name namespace
GO:0016311 dephosphorylation biological_process
GO:0046872 metal ion binding molecular_function
GO:0004721 phosphoprotein phosphatase activity molecular_function

KEGG:

id description
K17508 PTC7, PPTC7; protein phosphatase PTC7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026910763.2 True 2561 mRNA 0.42 6 16439215 16446758

Neighbor

gene id symbol gene type direction distance location
srrd srrd coding downstream 15629 16419042 ~ 16423586 (-)
cldn5a cldn5,LOC107670982 coding downstream 113490 16323640 ~ 16325725 (-)
ufd1l ufd1l coding downstream 133650 16302207 ~ 16305565 (-)
tmem127 tmem127,LOC107552193,LOC107713035,LOC106579884,LOC106585551 coding downstream 145513 16289058 ~ 16293702 (-)
LOC113524473 LOC108265577 coding downstream 150465 16279302 ~ 16288750 (-)
LOC113524481 cit,LOC108265536 coding upstream 180656 16627414 ~ 16683882 (-)
rab35b rab35,rab35b,LOC108430363,LOC107699662,LOC107671023 coding upstream 292570 16739328 ~ 16748224 (-)
gcn1 gcn1,LOC107552181 coding upstream 306063 16752821 ~ 16810992 (-)
pxnb pxn,pxnb,LOC108265409,LOC106529512,LOC102314602,LOC107754409,LOC107552183,LOC102212913 coding upstream 374389 16821147 ~ 16855885 (-)
ctu1 ctu1 coding upstream 403367 16850125 ~ 16855666 (-)
G133810 NA non-coding downstream 167008 16271634 ~ 16272207 (-)
G133720 NA non-coding downstream 278775 16159864 ~ 16160440 (-)
G133697 NA non-coding downstream 314478 16120357 ~ 16124737 (-)
G133698 LOC108265827,LOC108430339 non-coding downstream 320992 16116764 ~ 16118223 (-)
G133676 NA non-coding downstream 394633 16044262 ~ 16044582 (-)
G133914 NA non-coding upstream 1735 16448493 ~ 16448798 (-)
G133915 NA non-coding upstream 2114 16448872 ~ 16449270 (-)
G133916 NA non-coding upstream 2968 16449726 ~ 16450486 (-)
G134122 NA non-coding upstream 249178 16695936 ~ 16696673 (-)
G134211 NA non-coding upstream 402469 16849227 ~ 16849490 (-)
rnf165b rnf165,rnf165b,LOC108265796,LOC108430336,LOC107726876,LOC107569673 other downstream 339968 16085069 ~ 16099247 (-)
ccl27a NA other downstream 486536 15950262 ~ 15952679 (-)
LOC113532496 NA other downstream 1259019 15177787 ~ 15180196 (-)
sema6a sema6a,LOC107661172,LOC107663594,LOC106585847 other downstream 1375993 15001347 ~ 15063222 (-)
ccser1 ccser1 other downstream 1619487 14742482 ~ 14819728 (-)
ikbkb ikbkb other upstream 1601990 18048748 ~ 18084489 (-)
dynll1 dynll1,LOC103397138,LOC107559583 other upstream 1806827 18253585 ~ 18262218 (-)
ndufa4l2a LOC108434410,LOC108265249,LOC107678808,LOC107571901,LOC103362772 other upstream 3249640 19696398 ~ 19698530 (-)
LOC113533329 LOC108265714 other upstream 3526806 19973564 ~ 20005390 (-)
G135737 NA other upstream 3593539 20040297 ~ 20040688 (-)

Expression


Co-expression Network