gcn1 (gcn1,LOC107552181)


Basic Information

Item Value
gene id gcn1
gene name gcn1,LOC107552181
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 16752821 ~ 16810992 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026910721.2
CAGCCTATAGAATCAGCAAAGAGAGAATCTCGGCAAAGAGAGCGAGGCAGTGACACGGAAATgaggacttttttttctttttctttttttagctcGAGACCGGCAAGATGGCAGCGGACACGCAGGTTTCAGACACACTGAAGAAGTTTGCTGTGAAAGTGACTACATCGAGTGTTAAAGAGCGCAAAGAAATTTTAGGAGAACTGAAGGAATGCATAAATGGAAAGAATCTGCCTGAACCAGCTATCAAAGGTCTATGCAAGCTCTTTTGTCTTACCCTTCATCGATACAGGGATGCAGCCTCTCGCCGTGCTGTGCTCTCTGTTATTGACCTACTGGCCCAATCACAGCCTGATGCCATTGCTGCCCACCTGTCTTCTGGCCTTCTCACCTGTGGAGTTGTCAGTAAGGGCATAATGCCAGGGAAGAGCACAGCATCGGCTTCTTGTTGTGCCCTGCCATGGACTTGCCTAATAGTGCGTGTAGTCTTCCCCATGCCAGAGAACAGAGAGGCACCCCAATGGAAAAAACTGGTGGAGGTGCAGAGTCTGCTCTTCGCTGAGGTCATGGGTGGAGCCTCCAAAAATGCTATCAAGTCTGTCACTAAGCGGCTTAACAAGTTGTGGAAAGATATCCCAGGGTTGGTTGATCAGTACATGAGCACCGTGTTGAGCTTGGACCAGAGTCTCTTCTCTCTGCCACTGCTGGCTGCGTGTGTGGACTTCTGCACCTCTCAAAAAGACATGGCTACAATCAGCAAGCACAAGGCAGCTATCTTAGATCTGTACTTGAAGACTGTGCTGATGAGCAAAACCAGACCACTCCAGCACATTCTGGCTAAAAGTGGTTCTCTGCTTCGCCATGTTTCTCACTCTGAGTTCAAGGAGCAGCTCTTGCCCACTCTACAGAAAGCCCTGCTGCGTAGCCCTGAGAACTCCATGCAGACCATCTCCTCCATGCTGGCTTCACTTACTCTTGATCTCAGCCAGTATGCTTTGGACATTGGGAAGGGCCTTGCCAgccaGCTGAAGGCGAGTAACGTGGAATTAATGGAGCATGCAGTTCAGGCCATGCAGAATTTGGCCCAACAGTGTAGTGACCCAGCTGCCATCCAGGAGCTCATAACGCACCTCTTCGGCATTCTTGGAGGTTCAGAGGGAAAACTCACTGTAGTGGCCCAAAAAATGAATGTGCTTTCAGGGATTAAAAGCTGTAGCCGCCACTCAGTCTCTGGCTCCTCCAGCCAGTCACTCAGCTCCAGTGTGGCTCTGCAATTTATCCCGTTTTTGCAGCATGAAGTACATGAGGGGACACTGGTGCATGCTGTGTCTGTGATGTCTCAATGGATGGCACATCTGAATGTGGAGGTTCCAGCTGCTCTGAGAGACTGGCTTAAGAAAGCCTTCACACTGAAGTCCTCCACCTCCCCTGTGCGCCACGCCTACCTGCAGGCCATGCTCAGAGCCTTCAAAGGAGACACCTTGAGCCAGGCTGTGGATCTCGTTCCTCTCCTCATCCAGACGGTAGAGAAAGCGGCTGCTCAGAGCTCCCAGCATGCTCTTCTCTCTGAGGCCGTGGCAGCTTCAGTGCTGCTATGTCACCTCTCCATGCTGGACTCAATTCCTGAATCTAAACTGATCACCTTTTGGAACCTGATTTTGGATGAGAAAAAACCACTCTTTACCACAGAGAAATTTCTTGGGCAGACCAGTGAGGAAGcactGTGCACTGTACTGCAGCTGTGTGAGAGACTGTTCCTGGACCAGCCGCAGAGGCTCAATAACAGCAAGGCTCAGATGTACCACCGGGCCATGGTGGCTGTGCTCCTGTGCCGAGTGTATCAGGTACGGAAGCGTGCCCATCAGAGCATAAAGAAACTTCTTTCCTCACTGGGTGGCTCTAGCCTTGCCCACGGCCTTCTGGGAGAACTGTGTGTCGTCATCAACAAAcataagGTTTTGCCTCCAGAGGCTCTTCAGACTGAGACAGGAGAATGGACTGAGTTGGGTCGCTTATATATCCCTCCATGGATCCTCTTAGAGGCTCTGAGGGTGCTGTGCTCAGCAGCAGGCCAGTGGAATGACTCCAGCGAGGCTGAAAAACTGGCCCTAGATATGATTATCGTGGCCCACCATCCCTCCATTGtGGCTGTCAAATCAGAATTGTGGCCTTTGCTGTTGTCTAGCATGAAGATGgatgctgctgtgtttattgaCCAACATATGCAGACAATCCTCCCTCTACTGCTGGAGGGAAATGCTGACAACCAGGCTGTAAAAAATGCCATTGGGGAGTTGTCAGTCCTTTCTCCTGGGAAACTGCTCCCTTGTGTAATGAACCATGTGATCCAGAGGCTGTCCAATCCATCGCTGAAGCAGGTGACACGTCAGGAATATGCCATCATGAAGACACCGGAGGGGGAGCTGTATGACAAGAGCATCATCATGAGCGCCCAGCAAGAGAGCATTAAAAAGGGCAAcatgaagagagaaaataaggcATACTCCTTCAAAGAACAGATAATCGAACTTGAGCTACAGGAAGaaatcagaaagaagaaaggaattAAAGACGAGGTGCAGCTTACTAGCAAACAAAGGGACATGATGCAGAACCAGCTGGAGAAAGAGTCCTCTATCCGGAAGAAACTGCAACGGttggAGATGGAGTTGCAGTGTACAGTGGGGCTTTTGGAGGCCATTATGGCTCGTCACCCTCCTCAGATTTCTCACCACATTCCTGGAGTCCTTCATGTGCTCTTGCCCCTCCTGCACTCACCATTAGCTGCTCCCCATGTGCACCAAACCTTCCTCCATATTGGCACATGCGTCCTGCAAAAGCAGCTGCACTTCCTAGCTCTTCTTGTGGGTCATGTGACCTTGCGTCTGTTGAAGCCGGAATGTGAGCTGGACCCAGCATGGTCTCAGGAGGAACTGAACACAGCTTCACACCGGACCATCCAActgctgcatacacacacagtgccacaTAGAGAGGGCAAGACTGGTGCGCGCCCTCTGTCTGCACCggctttctctttctgtttcccaCTGCTGCAGGCCATCCTCAGCGTAAATAGCGGCACATCTGAGGAGGCAGAGCTCATGCTGACACATGCCCTACagatcattcacacacactctcagttgCGCTCCAGCAATGATCCCACTGATGTACTTATCGATGAGAATGGTCCGGAGCTTCTCCCCCGTGTGAACATGCTATTGCTGCTCAGCGAAGTGATTGGTACCTCCACACCACGACTGCAGGTGCTAGCTTCAGAATGTCTAACAGCTCTTTGTGCAAGTGCTGGAGGGCAGGAGGGCTGTGCATTGGCTGAGCAAGCTGAGATTGATGTGCTTCTAGAAGCCCTGCTCTCTCCCTGTTTTTCTGTTAGAGATGCGGCCCTCAGGGGTCTTTTGGAGCTGGAGCTGGCTTTGCCCACAGATAGTGTCGAGCCCAATGGGCTCAATGTGCTCAGGAGACTGTGGGTGGCCAAATTTGATGTGGAGGAGGAAGCCAGAGCGCTAGCTGACAAAATGTGGCAGACTCTGTGTCTGGAGTTGGTTCCTGAGCTGTGTCCACTGCTGATCAAAGATGTGACACACCATGAGGAAACAGTGAGGGCGGCGGCAGCCGAGGCTTTAGCCAGTGCTGTGAGTCAATACCAGGAAGAATCATCTACGGTTCTGTCCCAGCTTACCGAGCTCTACCAGCAGAAACTTTATAGACCACCACCAGTCCTGGACGCTTTGGGACGGGTAATCTCAGAAGCACCTCCTGACCAGTGGGCAGCAAGGTGCGGGATAGCACTGGCTCTTAATAAGCTCTCTCAGTGGCTAAGGGAGGATCAGGTGACTCccatctttctgttttttgtacCTGACGCTCTGAACGACAGGCACAGTGAGGTGCGACGCTGCATGCTGGATGCTGCAGTGTCTGTCCTCAACACCCACGGCAAGGACAATGTGAACTCTCTGCTGCCCGTGTTTGAGGAGTTCCTGAAGAACGCTCCTCAAGATGCCAGCTATGACTCAGTACGTCAGAGTGTGGTCATTCTCATGGGCTCACTGGCCAAACACCTGGACAAGAGTGACCCTAAAGTCAAGCCCATAGTCGCCAAGCTCATCACTACTCTCTCCACTCCCTCTCAGCAGGTCCAGGAGTCCGTGGCCAGTTGCTTGCCTCCTCTGGTGCCCGCTATAAAGGAGGATGCAGGTGACATGGTGCGCaagctgctgcagctgctgctggAGAGTGACAAGTATGCAGAGAGGAAAGGTGCTGCCTACGGCTTAGCTGGCTTAGTAAAGGGCCTGGGCATCCTCTCACTCAAACAGCAAGACATCATGACCACGCTCACTGATGCCATTCAGGACAAAAAGAATGCCAGACGCAGAGAGGGTGCGCTGTTTGCTTTCGAAATGCTGTGCAACATGCTGGGGAAACTGTTTGAGCCATATGTGGTGCATGTGCTGCCCCACCTTCTCCTCTGCTTTGGAGACGGGAACCAGTATGTCAGAGAGGCAGCAGATGACTGTGCCAAAGCTGTAATGCGCAATCTGAGTGCTCATGGGGTGAAGTTGGTTCTGCCCTCTCTCCTTGTAGCCCTAGAGGAAGAGTCCTGGAGGACCAAAGCAGGCTCAGTGGAGTTGCTCGGTGCCATGGCATTTTGTGCCCCTAAACAGCTGTCATCATGTCTGCCCAGCATTGTGCCCAAGCTGACCGAGGTTCTCACTGACTCACACGTCAAAGTGCAGAAAGCTGGGCAGCAGGCACTGCGTCAGATTGGCTCAGTCATCCGCAACCCTGAGATCCAGGCCATCACTCCCATTCTGCTGGATGCTCTTACGGACCCGTCACACAAGACGCAGCACTGTCTGCACACTCTGCTTGAGACCAaatttgtgcactttattgATGCTCCCTCACTGGCTCTCATCATGCCCATAGTCCAGAGGGCCTTTCAGGACCGGTCCACGGACACACGCAAAATGGCTGCACAGATCATCGGCAACATGTACTCCCTCACTGACCAGAAGGATCTCTCTCCGTACCTGCCTAGTGTGATTCCGGGACTGAAAACATCCCTACTGGATCCTGTACCAGAGGTGCGTACAGTGTCGGCGAAGGCTCTTGGTGCTATGGTCAAGGGCATGGGCGAGTCCTGCTTTGATGATCTGCTCCCCTGGCTGATGGAGACTCTAGCCTCTGAGCAGAGCTCTGTGGATCGCTCTGGAGCTGCACAGGgtCTGGCAGAGGTGATGGCTGGCTTAGGTGTCGAGAAGCTGGACAAACTGATGCCCGATGTTGTCCAGACGGCCAGCAAAGTGGACATTGCTTCTCATGTGCGCGATGGCTATATCATGATGTTTATCTACCTCCCACTCACCTTTGGTGAAAGGTTCACTCCCTATGTAGGCCCGATTATTCCCTGTATCCTCAAGGCTCTAGCCGATGAGAATGAGTATGTAAGAGACACAGCACTGAGAGCAGGCCAGCGCATCATCAGTATGTATGCAGAGACGGCCATTGCCCTGCTGCTGCCTGAGCTGGAACAAGGCTTGTTTGATGACCTCTGGAGGATCAGGTTCAGCTCAGTGCAGTTGCTAGGAGACCTGCTCTTCCACATCTCAGGGGTTTCAGGGAAGATGACAACAGAGACCGCTTCCGAGGATGACAACTTCGGCACAGCACAGTCCAACAAGGCCATTATTGGCGCACTGGGAGTGGAGCGAAGGAACCGTGTGCTCTCTGGCCTCTATATGGGTCGCTCAGACACACAGCTTGTGGTGAGACAGGCCTCCCTGCATGTCTGGAAGATTGTGGTGGCCAACACTCCGCGTACACTTCGAGAAATTCTGCCTACACTCTTCTCCCTGCTGCTGGGCTTCCTGGCCTCTACCTGCCCCGACAAGAGAACgATCGCAGCTCGTACTTTGGGGGATTTGGTGAGGAAGCTGGGGGAGAAGATCCTTCCGGAAATCATCCCCATTCTGGAGGAGGGTCTGCGATCTGAGAAGAGCGATGAGAGGCAGGGTGTGTGCATCGGTCTCAGCGAAATTATGAAATCCACCAGCAAAGATGCTGTGCTGGTGTTCTCTGAGTCCTTAGTGCCTACAGTGCGTAAAGCTTTGTGTGACCCACTAGAGGATGTGCGTGAGGCTGCAGCTAAAACCTTTGAACAGCTACACGCCACCATTGGCCACCAAGCACTGGACGACATCCTCCCTGCTCTGCTTAAACAACTGGAGGATGAGGAAACTGCTGAGTTTGCTCTGGACGGATTGAAGCAAGTTATGGCTGTGAAGAGTCGTTCAGTGCTGCCTTACTTGGTGCCCAagCTCACTGCTCCCCCAGTGAATACACGTGTGCTGGCCTTCCTGTCTGCTGTGACGGGTGATGCTCTGACACGTCACCTGGGTGTGATTCTGCCTGCTTTGCTCTCATCCCTCAAAGAAAAGCTGGGCACTGAGGAGGGGCCTCAGGAGTTAAGCAGCTGCCAGACTGTGATTTTGTCTGTTGAAGATGAAGTGGGTCAGCGGATCATCATTGAGGACCTGCTGGAGGCAACTCGCGGTGCAGATGCTGGACGCAGGGAGGCATCTGTTACCATCTTAAATGCCTACTTCTCCCGAACACGGCTTGACTACAGCACTCACACACGGACGCTGCTATCCGGCCTTGTGCGTCTGCTCAACGACCCCAGCCCTGAGGTGCTCCATCAGAGCTGGGACACTATCAACTCCATCACCAAGAAGTTGGATGCTGGAAGTCAGCTGGCTCTGATTGATGACTTGCACAGAGATATCCGTTCAGCAGCAGCTGAAGTTAGGGGTGAACATCTGCCTGGCTTCTGTCTGCCCAAAAAGGGAGTGACATGTATTTTGCCTGTTTTGAGAGAGGGAGTGCTGACAGGAAGCCCAGAGCAGAAGGAGGAAGCAGCACGTGCATTAGGTGCTGTCATCAAGCTGACTTCTTCTGAGGCTCTGCGGCCCTCTGTGGTCAATATCACTGGGCCGCTCATCCGTATACTCGGAGACCGTTTTGCCTGGACTGTGAAGACAGCTCTGCTTGAGACCTTGACCCTTCTGCTTCGCaagGTGGGCATAGTGCTGAAGCCGTTCCTTCCACAGCTCCAGACCACATTCCTGAAGGCCCTGCAGGACACGAGCAGACCTGTGAGGCTCAGAGCCGCCGAGGCTCTGGGACAACTTGTTTCAATACACTCAAAAGTGGACCCATTGTTTACAGAGCAGCTCTCAGCCATTCGCAACGCTGAGGACTCAGGCGTCAGGGAGACCATGCTGCAAGCCCTGAGGTTTGTCATTCAAGGTGCTGGAGCTAAAGTCGACCCTGCCATCAAGAAGAATATCACCACCACGTTGCTAGGCATGCTGGGACATGATGAGgaTGCCACACGTATGGCCTCTGCTGgatgtgttggtgtgttgtgtgCCTTCCTGTCTGAAGAAGAGCTGAGGACTGTTCTACAGCAGCATGTCCTTGCGGATGTGTCAGGAGTGGACTGGATGGTGCGCCATGGCCGCAGCATGGCTCTCGCTATAGCTGTGAAGTCTGCACCGGAACAGCTGTGTGCTCCAGAGTATAGTTCCACCGTACTGGATGTCATTTTATCCAGCACCACTGCAGACAGAATACCCATAGCTTGCAGTGGGATCAGGGCAATGGGTTACCTCCTGAGACACCAGCTCAGATCAGCTGGAGAAGATGCTGTCTCACCTCGTATTATCACTCAATTGGTCAAGAGTCTGCAAAATCATTCGAGTGATATCCGTCTGGTGACAGAGCGAGTGCTGTGGTGGGTGTGGAAGGAAGCGGACACCCCAGTCCTGGAGCCTAGTCTGATTAAACCAATCATCAAAGCCCTGCTGGACAACACCAAAGACAAGAACACCAGTGTACGTGCTCAGAGCGAACATACCATTGTCAACCTGCTACGACTCCGCCAAGGAGATACTGTCATGCAGAATATCAGTGGCATCTTAGACTCGGCCAGTAATGAGCTGTTGTCTGAGTGTTACCGTCGATCACTGAAGAAGATCTCAGGTCTGCCTGACTCCAATGAAGAAATTGATGATACTATCCTCACGTGATCTGCCCAAATCAGCTCTCCAAGATAGTCCATCAGTCCATTCTGATTTAATAGAGGATATGATGGCTTCACATGGCTGTCAGTTATGAAATGAGAAAACACCAcagaaaatgtatttctgacttttccaaatatttttctCCTATTGCATTTACAAAGCAACAAAATTGTTTCTCATTTATGCCAGTTCTAATCAAATGTTAACATACTTCTGATACCCAGTTTTGATTTTTATTGGTTGAGCACCAGTATTCATTTTAGCCTGTATTTTCAGTATTGTAATGTTATTCACTGAGTGTGTATGTTGAGAGTGGGGCAACCTAAAGGATGAgacactgattttttaaatcagcgCTGTATCCTTTGATAGtggttatataaataaaagaagagaaaacctttaatgatttaa

Function

symbol description
gcn1 Predicted to enable protein kinase binding activity; protein kinase regulator activity; and ribosome binding activity. Predicted to act upstream of or within positive regulation of kinase activity and regulation of translation. Orthologous to human GCN1 (GCN1 activator of EIF2AK4).

NR:

description
PREDICTED: translational activator GCN1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026910721.2 True 8531 mRNA 0.52 58 16752821 16810992

Neighbor

gene id symbol gene type direction distance location
rab35b rab35,rab35b,LOC108430363,LOC107699662,LOC107671023 coding downstream 4597 16739328 ~ 16748224 (-)
LOC113524481 cit,LOC108265536 coding downstream 68939 16627414 ~ 16683882 (-)
pptc7a pptc7,pptc7a,LOC107552188,LOC107553043,LOC107671007,LOC107699657,LOC103044306,LOC108430358 coding downstream 306063 16439215 ~ 16446758 (-)
srrd srrd coding downstream 329235 16419042 ~ 16423586 (-)
cldn5a cldn5,LOC107670982 coding downstream 427096 16323640 ~ 16325725 (-)
pxnb pxn,pxnb,LOC108265409,LOC106529512,LOC102314602,LOC107754409,LOC107552183,LOC102212913 coding upstream 10155 16821147 ~ 16855885 (-)
ctu1 ctu1 coding upstream 39133 16850125 ~ 16855666 (-)
upb1 upb1,LOC104952039 coding upstream 58188 16869180 ~ 16932248 (-)
LOC117597825 tkt coding upstream 211201 17022193 ~ 17036618 (-)
LOC117597826 tkt coding upstream 278564 17089556 ~ 17149771 (-)
G134122 NA non-coding downstream 56148 16695936 ~ 16696673 (-)
G133916 NA non-coding downstream 302335 16449726 ~ 16450486 (-)
G133915 NA non-coding downstream 303551 16448872 ~ 16449270 (-)
G133914 NA non-coding downstream 304023 16448493 ~ 16448798 (-)
G133810 NA non-coding downstream 480614 16271634 ~ 16272207 (-)
G134211 NA non-coding upstream 38235 16849227 ~ 16849490 (-)
G134221 NA non-coding upstream 129795 16940787 ~ 16940991 (-)
G134237 NA non-coding upstream 180111 16991103 ~ 16991311 (-)
G134243 NA non-coding upstream 205265 17016257 ~ 17016534 (-)
G134257 NA non-coding upstream 207728 17018720 ~ 17019404 (-)
rnf165b rnf165,rnf165b,LOC108265796,LOC108430336,LOC107726876,LOC107569673 other downstream 653574 16085069 ~ 16099247 (-)
ccl27a NA other downstream 800142 15950262 ~ 15952679 (-)
LOC113532496 NA other downstream 1572625 15177787 ~ 15180196 (-)
sema6a sema6a,LOC107661172,LOC107663594,LOC106585847 other downstream 1689599 15001347 ~ 15063222 (-)
ccser1 ccser1 other downstream 1933093 14742482 ~ 14819728 (-)
ikbkb ikbkb other upstream 1237756 18048748 ~ 18084489 (-)
dynll1 dynll1,LOC103397138,LOC107559583 other upstream 1442593 18253585 ~ 18262218 (-)
ndufa4l2a LOC108434410,LOC108265249,LOC107678808,LOC107571901,LOC103362772 other upstream 2885406 19696398 ~ 19698530 (-)
LOC113533329 LOC108265714 other upstream 3162572 19973564 ~ 20005390 (-)
G135737 NA other upstream 3229305 20040297 ~ 20040688 (-)

Expression


Co-expression Network