G134257


Basic Information

Item Value
gene id G134257
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 17018720 ~ 17019404 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU158622
GCAGATCTTTCTTTCTCAGCTGCTCAAGATGGTTGagcagttaaaggaaaaaaacaacatggtggtggagagtgctgTCAGTCATCAGTGTTGCTCtggtgccctgtggatgggggcggggtcatccttgaagagaccactcccatttGGAGAGAATATTTCATCATAAGATAAAAGTGATCAGTCTGAATAACTTTagattgatttgcagtgactttCCTCTAAAGGGATGAGTGGACATAAACCATGCCAGCAATTTAAATCACTGTTGAACCAAAGAGCTATGCATCAATAAACTACTGTAGTTACTGCGAGATCCTGAAAGAGCCATTAATGTAAACATGAttatgtgtgtagtgtacagaCGACcttcttaaaggaaaactccatcctgaaacacaGTTAATGATTATACTGAAATACttgatgtgcttagtgattctggtgctaatttgttgctgTATTctcgttattcctgtgagaactTGGTGGTTGTGTGTGGCGAggatgtcacagggggacaaTGCTAGTGCAATGTCAAACtcttagctcctaaaaacaaaaacacaagagcTTTTTTTTGCCACCATTTTGCagcaacatcatattaatgacaaATCCAGTGTTGTAGTGGATTGGAACAAACGTTGGCCTTAAAATTGCAGAACGAAGCGATACAACACGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU158622 True 685 lncRNA 0.41 1 17018720 17019404

Neighbor

gene id symbol gene type direction distance location
upb1 upb1,LOC104952039 coding downstream 86472 16869180 ~ 16932248 (-)
pxnb pxn,pxnb,LOC108265409,LOC106529512,LOC102314602,LOC107754409,LOC107552183,LOC102212913 coding downstream 162835 16821147 ~ 16855885 (-)
ctu1 ctu1 coding downstream 163054 16850125 ~ 16855666 (-)
gcn1 gcn1,LOC107552181 coding downstream 207728 16752821 ~ 16810992 (-)
rab35b rab35,rab35b,LOC108430363,LOC107699662,LOC107671023 coding downstream 270496 16739328 ~ 16748224 (-)
LOC117597825 tkt coding upstream 2789 17022193 ~ 17036618 (-)
LOC117597826 tkt coding upstream 70152 17089556 ~ 17149771 (-)
serpind1 serpind1 coding upstream 221785 17241189 ~ 17244145 (-)
naif1 naif1 coding upstream 284629 17304033 ~ 17312736 (-)
gle1 gle1,LOC102792584 coding upstream 335319 17354723 ~ 17375981 (-)
G134243 NA non-coding downstream 2186 17016257 ~ 17016534 (-)
G134237 NA non-coding downstream 27409 16991103 ~ 16991311 (-)
G134221 NA non-coding downstream 77729 16940787 ~ 16940991 (-)
G134211 NA non-coding downstream 169230 16849227 ~ 16849490 (-)
G134122 NA non-coding downstream 322047 16695936 ~ 16696673 (-)
G134260 NA non-coding upstream 1806 17021210 ~ 17089493 (-)
LOC113533642 NA non-coding upstream 132624 17152028 ~ 17160537 (-)
G134300 NA non-coding upstream 179978 17199382 ~ 17199749 (-)
G134305 NA non-coding upstream 215403 17234807 ~ 17235358 (-)
G134317 NA non-coding upstream 235492 17254896 ~ 17257456 (-)
rnf165b rnf165,rnf165b,LOC108265796,LOC108430336,LOC107726876,LOC107569673 other downstream 919473 16085069 ~ 16099247 (-)
ccl27a NA other downstream 1066041 15950262 ~ 15952679 (-)
LOC113532496 NA other downstream 1838524 15177787 ~ 15180196 (-)
sema6a sema6a,LOC107661172,LOC107663594,LOC106585847 other downstream 1955498 15001347 ~ 15063222 (-)
ccser1 ccser1 other downstream 2198992 14742482 ~ 14819728 (-)
ikbkb ikbkb other upstream 1029344 18048748 ~ 18084489 (-)
dynll1 dynll1,LOC103397138,LOC107559583 other upstream 1234181 18253585 ~ 18262218 (-)
ndufa4l2a LOC108434410,LOC108265249,LOC107678808,LOC107571901,LOC103362772 other upstream 2676994 19696398 ~ 19698530 (-)
LOC113533329 LOC108265714 other upstream 2954160 19973564 ~ 20005390 (-)
G135737 NA other upstream 3020893 20040297 ~ 20040688 (-)

Expression


Co-expression Network