gle1 (gle1,LOC102792584)


Basic Information

Item Value
gene id gle1
gene name gle1,LOC102792584
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 17354723 ~ 17375981 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026925920.2
CCGAAAACGCCGAAACAGAAGTAGAAgagaagacgaagaagaagaaaacagtgCGCTTCTTAGGTGCAAATTGGATAGTTCTATTTACTATACCGTAGCTGTCCTGTATATTACCACTATTCTTTTTTGTATATTAACATCAAAATGCCAGCTGAAAGTCTGAGATGGGAGACGCTGGAAGCTTTGAAAAACTCACCGAAAGCAAAAATCAAATACAGTCCAGACTGGCTTGAAAAGGGGGAGgacaTTTTAGCAGGCTGTAAAGAGGTAACCAgcctgtctcctctctctgaaCAAGTTCTTAAGAGACTGAGCCCTCGGTCTGTGCTGAAAAGTGGTTCCTGCTTGGGTTCCGTGATCCCTGATGCTAGTACATCTGAAGATGGCCTCATCTCTAGGTCATCTGCTGTTAAAATGTCACCACTGCTGCTCACTGTTGAAAATGAGGTGAAGGTGGCTGATAATAAATCAGAGAATTTGAGCTCCACTGTGGACATGTGCAGCAGTTCACCACCACCCATCTCCTTCCTCTCACCCAAGCACACTCGGATGGCTGGCTGCATCCGCATCTGTGAGAAGAAACATTGGGCTAAAGCCAAGGCAGAGCTGAACCTGAGGCAGGAGCAGCAGGACTGTCTGGTGGCTGGTGTTGCCAGTCGGGAATCAGAGCAGCTTAAACGCTTTGAGGAGTTCATGGAGCTTAAGCAGAGACAGGAGTACCAGAGCATGAGGGACATGATGGAAAAGGAAACACAGGAAAGCCTTGGACGCCAGGAGAAGTTAAAGGAAGAACACAGACATAGAATGAAAATCCTAAACCTGCGGCTGCGGGAGGCAGAACAGCAGAGGCTGAGGGAGGCAGAGCTCGAGCGGCAGAGGCAGCTGGAGGGCAGGGATAGGCTGAGAGCACTCAATGCCATTCAAGAGGAGGTGCTTAGACTCAATCAGCTCCTGGAACCTGAATGTTACACACAAACAAGCCCCACCTTGGACTATACTTCTTACGTCACCCGGGGCAACCAACTTTGTTCACAGGTTTCAGAGGTGGTACGCACTACGACTGAAGGACAGTTTCCAACTGTTGAGGACATGACTGTGGTAGAACAGGCCCTACAGGAAATGAGAACACTGGTTAGAGCCATCCAAGAGGAGCTTGCTCAGGcacaagagaaaaagaagaatgagcaggaggaagaagagTATAGGAAGAAACAGGCGGAGATGAAACCCCAgcaagaagaacagaagaaaattGCAGCATTATCTGTTAAAGAGAAAGCCAAAAAACAAGGCCTGCAGACTATAGCTGATGACAGCACCTTGAAGTGGTACAAAGAACTGCAAAGTTTGGCCAGCCACTATGCCCAGTCCTTTGAAGATTTGAACAACACAAAGGATATGCAGacaaaaaaaatgagaatgGAGCTCCAGAAAGCTGCAACAATTCCTGTGAGCCAGATCTCTAGTATTTCAGGTTCCCAACTGAAGGAGATTTTTGACAAGATTGACAGACTGTTATTAGGACGACCAGTTGTGTCTGGTGGAAAGTCAGTTTCCACATCCCTGCATCCTCATGGACTAGAATTTGTGAGCTATAAATTGGCAGAAAAGTTTGTGAAACAAGGAGAAGAGGAGGTAGCATCTCACCATGAAGCTGCATTCCCCATTGCAGTTGTGGCTTCAGGTGTATGGGAGTTGCACCCTAAAGTAGGAGACCTCATCTTAGCACATCTCCACAAGAAGTGTCCATATGCTGTTCCTCACTACCCCCCAATGAAGGATGGCACCTCCATTGAAGAATATCAACAGATTCTGGGATATCGGGTGGATGAGTCAGGGGTGGAAGGTCAGGACAGTTTCTTAAAAAGGATGTCTGGAATGATCCGACTCTATGCAGCCATAATACACCTAAGATGGCCTTATACTAACAAACAAGGGATGCAGTTCTCATATTTCTCGCTACAGGCTGGTCCTCATGGACTGAATCATGGCTGGCGTTGGTTGGCTCAGATGCTGAACATGGAGCCTCTTGCTGACGTTACAGCAACTCTTCTGTTTGACTTTCTAGAgGTTTGTGGAAATGCACTTATGAAACAATACCAAGGGCAGTTTTGGAAGCTTCTGCTCCTCATCAAAGAGGAATATTTTCCCAGGATTGAAGCAGTCACCAGCAGTGGTCAGATGGGCTCTGTAACAAGACTTAAACAGTTTCTGGAGAACTCCTTAAGAAACAAGCAGATTGAGCCACCCAAAGGACAGCTGAACTCAGCCTTTTGGAGATCCTGAGGGCTTTGATTGTTCATCTGTCAGCTACCTCAGTGCTTATGAAGAATATACCATGAATCCTGACAAGCTGTTTATACTCAGCCACTATGTTCAATATTGAAGTAAAAGTGTCATGGCTTGTATTACGATCCCACAAATCCttgctgtgtgtgctgctgtggaTGTTACAAAATCAAATTATTTTGGTGTACCAAAATATCCAATCAGTTAATCATGTTGCAGCacagcaatgcataaaatcatgtagatagaGGTCGAGAATTAATGTtaatcagttaatgttcacatcaaacataggAATGTGATCTtggtgactttgaccatggcatagTTATGACTTCAGGTTCAGTGAAACTGGACAATTGAAAATTCAGTATGACCTGTATGACCCATGACCTGTTTCTGCAGGatattatgcattgcactgctgccacatcaTTGGCTGACtggaaaattgcatgaatgtgaagaggtacaggtgtttctattaaagtgtcCAGTGtgtttcatgtattttatttagccTGTGGTATATTTTCCCTGTTCCTGGGGTTTATTTCTTGGACAAAAATGTAGATGTGTTCATTACTGATGTCACAGGATAACTTTGGAATATGTCATTAATGAAGTCATACAtcacatttataattttataatgattacaatttatacactcactgagcactttattaggaaaacctgtacacctacacattcatgaaattatctaatcagccaatcatgtggcagcagttcAATGCCTACAGTCATGCAGATacgcagtctctagagtttactcagaatggtgcaataaagaaaaaaacatccagtgatgAGTTGAATCTGctttgctgatgagagaggtcaatgg
>XM_026925921.2
CCGAAAACGCCGAAACAGAAGTAGAAgagaagacgaagaagaagaaaacagtgCGCTTCTTAGGTGCAAATTGGATAGTTCTATTTACTATACCGTAGCTGTCCTGTATATTACCACTATTCTTTTTTGTATATTAACATCAAAATGCCAGCTGAAAGTCTGAGATGGGAGACGCTGGAAGCTTTGAAAAACTCACCGAAAGCAAAAATCAAATACAGTCCAGACTGGCTTGAAAAGGGGGAGgacaTTTTAGCAGGCTGTAAAGAGGTAACCAgcctgtctcctctctctgaaCAAGTTCTTAAGAGACTGAGCCCTCGGTCTGTGCTGAAAAGTGGTTCCTGCTTGGGTTCCGTGATCCCTGATGCTAGTACATCTGAAGATGGCCTCATCTCTAGGTCATCTGCTGTTAAAATGTCACCACTGCTGCTCACTGTTGAAAATGAGGTGAAGGTGGCTGATAATAAATCAGAGAATTTGAGCTCCACTGTGGACATGTGCAGCAGTTCACCACCACCCATCTCCTTCCTCTCACCCAAGCACACTCGGATGGCTGGCTGCATCCGCATCTGTGAGAAGAAACATTGGGCTAAAGCCAAGGCAGAGCTGAACCTGAGGCAGGAGCAGCAGGACTGTCTGGTGGCTGGTGTTGCCAGTCGGGAATCAGAGCAGCTTAAACGCTTTGAGGAGTTCATGGAGCTTAAGCAGAGACAGGAGTACCAGAGCATGAGGGACATGATGGAAAAGGAAACACAGGAAAGCCTTGGACGCCAGGAGAAGTTAAAGGAAGAACACAGACATAGAATGAAAATCCTAAACCTGCGGCTGCGGGAGGCAGAACAGCAGAGGCTGAGGGAGGCAGAGCTCGAGCGGCAGAGGCAGCTGGAGGGCAGGGATAGGCTGAGAGCACTCAATGCCATTCAAGAGGAGGTGCTTAGACTCAATCAGCTCCTGGAACCTGAATGTTACACACAAACAAGCCCCACCTTGGACTATACTTCTTACGTCACCCGGGGCAACCAACTTTGTTCACAGGTTTCAGAGGTGGTACGCACTACGACTGAAGGACAGTTTCCAACTGTTGAGGACATGACTGTGGTAGAACAGGCCCTACAGGAAATGAGAACACTGGTTAGAGCCATCCAAGAGGAGCTTGCTCAGGcacaagagaaaaagaagaatgagcaggaggaagaagagTATAGGAAGAAACAGGCGGAGATGAAACCCCAgcaagaagaacagaagaaaattGCAGCATTATCTGTTAAAGAGAAAGCCAAAAAACAAGGCCTGCAGACTATAGCTGATGACAGCACCTTGAAGTGGTACAAAGAACTGCAAAGTTTGGCCAGCCACTATGCCCAGTCCTTTGAAGATTTGAACAACACAAAGGATATGCAGacaaaaaaaatgagaatgGAGCTCCAGAAAGCTGCAACAATTCCTGTGAGCCAGATCTCTAGTATTTCAGGTTCCCAACTGAAGGAGATTTTTGACAAGATTGACAGACTGTTATTAGGACGACCAGTTGTGTCTGGTGGAAAGTCAGTTTCCACATCCCTGCATCCTCATGGACTAGAATTTGTGAGCTATAAATTGGCAGAAAAGTTTGTGAAACAAGGAGAAGAGGAGGTAGCATCTCACCATGAAGCTGCATTCCCCATTGCAGTTGTGGCTTCAGGTGTATGGGAGTTGCACCCTAAAGTAGGAGACCTCATCTTAGCACATCTCCACAAGAAGTGTCCATATGCTGTTCCTCACTACCCCCCAATGAAGGATGGCACCTCCATTGAAGAATATCAACAGATTCTGGGATATCGGGTGGATGAGTCAGGGGTGGAAGGTCAGGACAGTTTCTTAAAAAGGATGTCTGGAATGATCCGACTCTATGCAGCCATAATACACCTAAGATGGCCTTATACTAACAAACAAGGGTTCTCATATTTCTCGCTACAGGCTGGTCCTCATGGACTGAATCATGGCTGGCGTTGGTTGGCTCAGATGCTGAACATGGAGCCTCTTGCTGACGTTACAGCAACTCTTCTGTTTGACTTTCTAGAgGTTTGTGGAAATGCACTTATGAAACAATACCAAGGGCAGTTTTGGAAGCTTCTGCTCCTCATCAAAGAGGAATATTTTCCCAGGATTGAAGCAGTCACCAGCAGTGGTCAGATGGGCTCTGTAACAAGACTTAAACAGTTTCTGGAGAACTCCTTAAGAAACAAGCAGATTGAGCCACCCAAAGGACAGCTGAACTCAGCCTTTTGGAGATCCTGAGGGCTTTGATTGTTCATCTGTCAGCTACCTCAGTGCTTATGAAGAATATACCATGAATCCTGACAAGCTGTTTATACTCAGCCACTATGTTCAATATTGAAGTAAAAGTGTCATGGCTTGTATTACGATCCCACAAATCCttgctgtgtgtgctgctgtggaTGTTACAAAATCAAATTATTTTGGTGTACCAAAATATCCAATCAGTTAATCATGTTGCAGCacagcaatgcataaaatcatgtagatagaGGTCGAGAATTAATGTtaatcagttaatgttcacatcaaacataggAATGTGATCTtggtgactttgaccatggcatagTTATGACTTCAGGTTCAGTGAAACTGGACAATTGAAAATTCAGTATGACCTGTATGACCCATGACCTGTTTCTGCAGGatattatgcattgcactgctgccacatcaTTGGCTGACtggaaaattgcatgaatgtgaagaggtacaggtgtttctattaaagtgtcCAGTGtgtttcatgtattttatttagccTGTGGTATATTTTCCCTGTTCCTGGGGTTTATTTCTTGGACAAAAATGTAGATGTGTTCATTACTGATGTCACAGGATAACTTTGGAATATGTCATTAATGAAGTCATACAtcacatttataattttataatgattacaatttatacactcactgagcactttattaggaaaacctgtacacctacacattcatgaaattatctaatcagccaatcatgtggcagcagttcAATGCCTACAGTCATGCAGATacgcagtctctagagtttactcagaatggtgcaataaagaaaaaaacatccagtgatgAGTTGAATCTGctttgctgatgagagaggtcaatgg
>XM_026925922.2
CCGAAAACGCCGAAACAGAAGTAGAAgagaagacgaagaagaagaaaacagtgCGCTTCTTAGGTGCAAATTGGATAGTTCTATTTACTATACCGTAGCTGTCCTGTATATTACCACTATTCTTTTTTGTATATTAACATCAAAATGCCAGCTGAAAGTCTGAGATGGGAGACGCTGGAAGCTTTGAAAAACTCACCGAAAGCAAAAATCAAATACAGTCCAGACTGGCTTGAAAAGGGGGAGgacaTTTTAGCAGGCTGTAAAGAGGTAACCAgcctgtctcctctctctgaaCAAGTTCTTAAGAGACTGAGCCCTCGGTCTGTGCTGAAAAGTGGTTCCTGCTTGGGTTCCGTGATCCCTGATGCTAGTACATCTGAAGATGGCCTCATCTCTAGGTCATCTGCTGTTAAAATGTCACCACTGCTGCTCACTGTTGAAAATGAGGTGAAGGTGGCTGATAATAAATCAGAGAATTTGAGCTCCACTGTGGACATGTGCAGCAGTTCACCACCACCCATCTCCTTCCTCTCACCCAAGCACACTCGGATGGCTGGCTGCATCCGCATCTGTGAGAAGAAACATTGGGCTAAAGCCAAGGCAGAGCTGAACCTGAGGCAGGAGCAGCAGGACTGTCTGGTGGCTGGTGTTGCCAGTCGGGAATCAGAGCAGCTTAAACGCTTTGAGGAGTTCATGGAGCTTAAGCAGAGACAGGAGTACCAGAGCATGAGGGACATGATGGAAAAGGAAACACAGGAAAGCCTTGGACGCCAGGAGAAGTTAAAGGAAGAACACAGACATAGAATGAAAATCCTAAACCTGCGGCTGCGGGAGGCAGAACAGCAGAGGCTGAGGGAGGCAGAGCTCGAGCGGCAGAGGCAGCTGGAGGGCAGGGATAGGCTGAGAGCACTCAATGCCATTCAAGAGGAGGTGCTTAGACTCAATCAGCTCCTGGAACCTGAATGTTACACACAAACAAGCCCCACCTTGGACTATACTTCTTACGTCACCCGGGGCAACCAACTTTGTTCACAGGTTTCAGAGGTGGTACGCACTACGACTGAAGGACAGTTTCCAACTGTTGAGGACATGACTGTGGTAGAACAGGCCCTACAGGAAATGAGAACACTGGTTAGAGCCATCCAAGAGGAGCTTGCTCAGGcacaagagaaaaagaagaatgagcaggaggaagaagagTATAGGAAGAAACAGGCGGAGATGAAACCCCAgcaagaagaacagaagaaaattGCAGCATTATCTGTTAAAGAGAAAGCCAAAAAACAAGGCCTGCAGACTATAGCTGATGACAGCACCTTGAAGTGGTACAAAGAACTGCAAAGTTTGGCCAGCCACTATGCCCAGTCCTTTGAAGATTTGAACAACACAAAGGATATGCAGacaaaaaaaatgagaatgGAGCTCCAGAAAGCTGCAACAATTCCTGTGAGCCAGATCTCTAGTATTTCAGGTTCCCAACTGAAGGAGATTTTTGACAAGATTGACAGACTGTTATTAGGACGACCAGTTGTGTCTGGTGGAAAGTCAGTTTCCACATCCCTGCATCCTCATGGACTAGAATTTGTGAGCTATAAATTGGCAGAAAAGTTTGTGAAACAAGGAGAAGAGGAGGTAGCATCTCACCATGAAGCTGCATTCCCCATTGCAGTTGTGGCTTCAGGTGTATGGGAGTTGCACCCTAAAGTAGGAGACCTCATCTTAGCACATCTCCACAAGAAGTGTCCATATGCTGTTCCTCACTACCCCCCAATGAAGGATGGCACCTCCATTGAAGAATATCAACAGATTCTGGGATATCGGGTGGATGAGTCAGGGGTGGAAGGTCAGGACAGTTTCTTAAAAAGGATGTCTGGAATGATCCGACTCTATGCAGCCATAATACACCTAAGATGGCCTTATACTAACAAACAAGGGGCTGGTCCTCATGGACTGAATCATGGCTGGCGTTGGTTGGCTCAGATGCTGAACATGGAGCCTCTTGCTGACGTTACAGCAACTCTTCTGTTTGACTTTCTAGAgGTTTGTGGAAATGCACTTATGAAACAATACCAAGGGCAGTTTTGGAAGCTTCTGCTCCTCATCAAAGAGGAATATTTTCCCAGGATTGAAGCAGTCACCAGCAGTGGTCAGATGGGCTCTGTAACAAGACTTAAACAGTTTCTGGAGAACTCCTTAAGAAACAAGCAGATTGAGCCACCCAAAGGACAGCTGAACTCAGCCTTTTGGAGATCCTGAGGGCTTTGATTGTTCATCTGTCAGCTACCTCAGTGCTTATGAAGAATATACCATGAATCCTGACAAGCTGTTTATACTCAGCCACTATGTTCAATATTGAAGTAAAAGTGTCATGGCTTGTATTACGATCCCACAAATCCttgctgtgtgtgctgctgtggaTGTTACAAAATCAAATTATTTTGGTGTACCAAAATATCCAATCAGTTAATCATGTTGCAGCacagcaatgcataaaatcatgtagatagaGGTCGAGAATTAATGTtaatcagttaatgttcacatcaaacataggAATGTGATCTtggtgactttgaccatggcatagTTATGACTTCAGGTTCAGTGAAACTGGACAATTGAAAATTCAGTATGACCTGTATGACCCATGACCTGTTTCTGCAGGatattatgcattgcactgctgccacatcaTTGGCTGACtggaaaattgcatgaatgtgaagaggtacaggtgtttctattaaagtgtcCAGTGtgtttcatgtattttatttagccTGTGGTATATTTTCCCTGTTCCTGGGGTTTATTTCTTGGACAAAAATGTAGATGTGTTCATTACTGATGTCACAGGATAACTTTGGAATATGTCATTAATGAAGTCATACAtcacatttataattttataatgattacaatttatacactcactgagcactttattaggaaaacctgtacacctacacattcatgaaattatctaatcagccaatcatgtggcagcagttcAATGCCTACAGTCATGCAGATacgcagtctctagagtttactcagaatggtgcaataaagaaaaaaacatccagtgatgAGTTGAATCTGctttgctgatgagagaggtcaatgg

Function

symbol description
gle1 Predicted to enable inositol hexakisphosphate binding activity; phospholipid binding activity; and translation initiation factor binding activity. Involved in Schwann cell development and regulation of cilium beat frequency involved in ciliary motility. Acts upstream of or within epithelial cilium movement involved in determination of left/right asymmetry; neurogenesis; and poly(A)+ mRNA export from nucleus. Predicted to be located in nucleus. Predicted to be part of nuclear pore cytoplasmic filaments. Predicted to be active in cytoplasm. Is expressed in several structures, including head; intestine; pectoral fin; pectoral fin bud; and trunk musculature. Used to study lethal congenital contracture syndrome 1. Human ortholog(s) of this gene implicated in lethal congenital contracture syndrome 1. Orthologous to human GLE1 (GLE1 RNA export mediator).

NR:

description
nucleoporin GLE1 isoform X3

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0016973 poly(A)+ mRNA export from nucleus biological_process
GO:0005643 nuclear pore cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K18723 GLE1; nucleoporin GLE1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026925920.2 True 3157 mRNA 0.44 16 17354723 17375981
XM_026925921.2 False 3151 mRNA 0.44 16 17354723 17375981
XM_026925922.2 False 3130 mRNA 0.44 16 17354723 17375981

Neighbor

gene id symbol gene type direction distance location
naif1 naif1 coding downstream 41987 17304033 ~ 17312736 (-)
serpind1 serpind1 coding downstream 110578 17241189 ~ 17244145 (-)
LOC117597826 tkt coding downstream 204952 17089556 ~ 17149771 (-)
LOC117597825 tkt coding downstream 318105 17022193 ~ 17036618 (-)
upb1 upb1,LOC104952039 coding downstream 422475 16869180 ~ 16932248 (-)
snap29 snap29 coding upstream 501434 17877415 ~ 17889450 (-)
si:dkeyp-117b11.1 LOC108265828 coding upstream 571085 17947066 ~ 18007340 (-)
LOC113533608 LOC108265095,LOC108440311 coding upstream 757159 18133140 ~ 18135241 (-)
mrpl40 mrpl40,LOC107753002 coding upstream 859133 18235114 ~ 18240662 (-)
gapvd1 gapvd1,LOC108265693,LOC107550582,LOC107723237 coding upstream 947712 18323693 ~ 18395412 (-)
G134317 NA non-coding downstream 97267 17254896 ~ 17257456 (-)
G134305 NA non-coding downstream 119365 17234807 ~ 17235358 (-)
G134300 NA non-coding downstream 154974 17199382 ~ 17199749 (-)
LOC113533642 NA non-coding downstream 194186 17152028 ~ 17160537 (-)
G134260 NA non-coding downstream 265230 17021210 ~ 17089493 (-)
G134459 NA non-coding upstream 141579 17517560 ~ 17517795 (-)
G134520 NA non-coding upstream 361611 17737592 ~ 17738065 (-)
G134522 NA non-coding upstream 362945 17738926 ~ 17739247 (-)
G134526 NA non-coding upstream 386712 17762693 ~ 17762898 (-)
G134531 NA non-coding upstream 469936 17845917 ~ 17846118 (-)
rnf165b rnf165,rnf165b,LOC108265796,LOC108430336,LOC107726876,LOC107569673 other downstream 1255476 16085069 ~ 16099247 (-)
ccl27a NA other downstream 1402044 15950262 ~ 15952679 (-)
LOC113532496 NA other downstream 2174527 15177787 ~ 15180196 (-)
sema6a sema6a,LOC107661172,LOC107663594,LOC106585847 other downstream 2291501 15001347 ~ 15063222 (-)
ccser1 ccser1 other downstream 2534995 14742482 ~ 14819728 (-)
ikbkb ikbkb other upstream 672767 18048748 ~ 18084489 (-)
dynll1 dynll1,LOC103397138,LOC107559583 other upstream 877604 18253585 ~ 18262218 (-)
ndufa4l2a LOC108434410,LOC108265249,LOC107678808,LOC107571901,LOC103362772 other upstream 2320417 19696398 ~ 19698530 (-)
LOC113533329 LOC108265714 other upstream 2597583 19973564 ~ 20005390 (-)
G135737 NA other upstream 2664316 20040297 ~ 20040688 (-)

Expression


Co-expression Network