RNA id: XM_026910776.2


Basic Information

Item Value
RNA id XM_026910776.2
length 2086
RNA type mRNA
GC content 0.48
exon number 1
gene id cldn5a
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 16323640 ~ 16325725 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGCGTGGAGACTCATTCACCCGCTGCTTGTGGCGTAGCGTCTGTGCGCAGTTATCCTTCTCCGCTCCACACTCTCCTGCGCGCAAAGACCGTTATTCAGAGCGCCATACAGAACGCCATGGTGTTTACCTGAGAGAAGCATATGCGTCTTTGAAACGAACAACTGGAAAGTGGACCAGCTATATCGCCCTTTAAGAAGCGGACTATTCATCGGACCCGGAGGGTAATAATAAGGACAACATTGTAAGGAAAGATGGCCTCGGCGGGTCTGGAGCTGCTCGGCCTGACGCTAGCTGTGCTCGGCACGCTGTTAGAGATGATCGCATGCGGTCTGCCCACGTGGAAGGTGGCGGCGCACATTGAGGCCAACATCGTGGTGTCGCAGACCATCTGGGACGGCCTGTGGATGTCTTGTGCTGTGCAGAGCACGGGCCAGATGCAGTGTAAGGTGCACGACTCGATGCTGGCGCTGAGCAGCGACCTGCAGGTGGCGCGTGCGCTCACTGTGGTGTCGTCCGTGCTGTGCGTGCTGGCGCTGCTGGCTGTGATCGCCGGAGCGCAGTGCACCAACTGCATCCGTGACGAGCTCGTAAAGGTGAGAGTAGTGAACTTCGGAGGAGCGCTGTACATCGTCAGCGCCGTGCTTGTGCTCGTGCCCCTCTGCTGGATGGCCAACAAAATCATCGCCGATTTTTACAACCAGCACGTGCCCACGGCCCAAAAGCGCGAGATGGGCGCCGCGCTCTACATCGGCTGGGCGGCTGCGGCGCTCCTGCTGCTGGGCGGCTCTGTGCTCTGCTGCTCGTGTCCGCCAGCATCAGCAGCCAGTGCGGGTTACTCAGTCAACTACGCGCCCACGAAAAGAGCCACGACCAACGGAGACTACGACAAGCGGAACTACGTGTAAATCTACAGCTGGAGCCACGCGTAAAGCCCTGGTTACGGCTGACCGCATAACCCACTAGCCGTGCGACGTGTGATTTGCGCATAACACTTAGTACACtagtaagaaaaaaattccACCCAGCACCCTTAAAGGTTTTTCGGttttaaaggttctgtgtagaacccaaCAACAGAGGAGGTCACTTCCAAAGGTCCACGTAGAATCCGTTTAGAAAGCTCGAAcccttaaccatccaaagaatcctttctgtaaatgtaacaaaGTCTGTCAAAATATAGTGGCATGTACTTCGGCATAGTAGACTATTCGCATTGATTAAAATATggcagaagaagagagaagtaGCCAACCATTGTTCCTAAACCTGTAAAATGATCTCAGGCGTAAATGTGATTCTGTACTGAGATGATTCACTGTACTGAGGAGCTAATGATGGCCTGGCAGAAGAAGCCTGGGTGATTTCTTGTAGCCTGTGTGTTTTTGCACCTGTAGATTTTTTCTGTCTAAACCTAAATGTAAATGACCTGTTTGTCCCCTGGTCATGGACTCTTACTGCCTTATACGGACTTTTTTGTACTCTCGATACTCCCTGTTTTAAACTTATAGGCTATGCATTTTGAAGGGCTAAAAAGGACAAAACCGCCTTAATTTCATCctaaaatctcatttttaaataatagtttaacTGTTTTGACCACAGCTGTTTGCCAGACCCTTAACaaaacatgatgatgatgatgatgatgattatgataattattattatcgaTTGTTTTCATGGATTGGTTGAAAGCGGTCTATTCGAGAGTCCTTACTCTGCTTGGGAGGTTTGAATGCAGAGACTTTTCCTGTCAGAAAAGTGGACTGTCAGACACGGCTGCCTATATTGAGAAACTGATGTGGATTTTTACAGTAGCTGTCTAGATAAAGGAGCAGGTGCTCTAAAGGACAGGCCAGACCAGTGTGCCCTGCACTATGAAAATAATGTGCTGGACATACATCGTTTGTGCCTTGTAACGATGGAGCGCCTTATTTTATTCGTATCTTTAACCAATAAGACCACCGATACCAAAATTTGTCCTCAATAGTCTACttctggtttattttttaactttcattGTATTATGTTGAACGCTttgaattgaaatgtttttaataaacagtTATTATCATAATGGAA

Function

GO:

id name namespace
GO:0061028 establishment of endothelial barrier biological_process
GO:0005886 plasma membrane cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K06087 CLDN; claudin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158075 lncRNA downstream 51433 16271634 ~ 16272207 (-) True G133810
TU157976 lncRNA downstream 163200 16159864 ~ 16160440 (-) True G133720
TU157949 lncRNA downstream 198903 16120357 ~ 16124737 (-) True G133697
TU157950 lncRNA downstream 205417 16116764 ~ 16118223 (-) True G133698
TU157943 lncRNA downstream 224425 16096673 ~ 16099215 (-) False rnf165b
TU158202 lncRNA upstream 122768 16448493 ~ 16448798 (-) True G133914
TU158203 lncRNA upstream 123147 16448872 ~ 16449270 (-) True G133915
TU158204 lncRNA upstream 124001 16449726 ~ 16450486 (-) True G133916
TU158460 lncRNA upstream 370211 16695936 ~ 16696673 (-) True G134122
TU158575 lncRNA upstream 523502 16849227 ~ 16849490 (-) True G134211
XM_026910765.2 mRNA downstream 18075 16302207 ~ 16305565 (-) True ufd1l
XM_026910771.2 mRNA downstream 29938 16289058 ~ 16293702 (-) True tmem127
XM_034306377.1 mRNA downstream 34890 16279302 ~ 16288750 (-) True LOC113524473
XM_026910719.2 mRNA downstream 123108 16186690 ~ 16200532 (-) True adra1aa
XM_026916327.2 mRNA downstream 224393 16085069 ~ 16099247 (-) True rnf165b
XM_026910753.2 mRNA upstream 93317 16419042 ~ 16423586 (-) True srrd
XM_026910763.2 mRNA upstream 113490 16439215 ~ 16446758 (-) True pptc7a
XM_034306677.1 mRNA upstream 301689 16627414 ~ 16683882 (-) False LOC113524481
XM_034306680.1 mRNA upstream 301690 16627415 ~ 16683882 (-) False LOC113524481
XM_034306675.1 mRNA upstream 301690 16627415 ~ 16683882 (-) False LOC113524481
XR_004578582.1 other downstream 224406 16096632 ~ 16099234 (-) False rnf165b
TU157827 other downstream 370961 15950325 ~ 15952679 (-) False ccl27a
trnad-guc_2 other downstream 987973 15335596 ~ 15335667 (-) True trnad-guc_2
TU157316 other downstream 1143516 15177789 ~ 15180124 (-) False LOC113532496
XR_003403097.2 other downstream 1598957 14332392 ~ 14724683 (-) False grid2
TU159072 other upstream 1741531 18067256 ~ 18084483 (-) False ikbkb
TU159186 other upstream 1927860 18253585 ~ 18262218 (-) False dynll1
TU159181 other upstream 1933860 18259585 ~ 18261956 (-) False dynll1
TU160210 other upstream 3665138 19990863 ~ 19993744 (-) False LOC113533329
TU160320 other upstream 3714572 20040297 ~ 20040688 (-) True G135737

Expression Profile