Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU157943 |
| length | 1494 |
| lncRNA type | sense_over |
| GC content | 0.40 |
| exon number | 2 |
| gene id | rnf165b |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047602.1 |
| NCBI id | CM018548.1 |
| chromosome length | 30442583 |
| location | 16085069 ~ 16099247 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU157925 | lncRNA | downstream | 52091 | 16044262 ~ 16044582 (-) | True | G133676 |
| TU157910 | lncRNA | downstream | 83122 | 16005758 ~ 16013551 (-) | True | G133663 |
| TU157912 | lncRNA | downstream | 88346 | 15999008 ~ 16008327 (-) | True | G133664 |
| TU157950 | lncRNA | upstream | 17549 | 16116764 ~ 16118223 (-) | True | G133698 |
| TU157949 | lncRNA | upstream | 21142 | 16120357 ~ 16124737 (-) | True | G133697 |
| TU157976 | lncRNA | upstream | 60649 | 16159864 ~ 16160440 (-) | True | G133720 |
| TU158075 | lncRNA | upstream | 172419 | 16271634 ~ 16272207 (-) | True | G133810 |
| TU158202 | lncRNA | upstream | 349278 | 16448493 ~ 16448798 (-) | True | G133914 |
| XM_026915276.2 | mRNA | downstream | 74769 | 16019749 ~ 16021904 (-) | True | avp |
| XM_034306263.1 | mRNA | downstream | 77968 | 16017259 ~ 16018705 (-) | True | LOC117597775 |
| XM_026915289.2 | mRNA | downstream | 84012 | 16011028 ~ 16012661 (-) | True | LOC113527457 |
| XM_034306262.1 | mRNA | downstream | 91618 | 16003314 ~ 16005055 (-) | True | LOC117597774 |
| XM_026915207.2 | mRNA | downstream | 104704 | 15980165 ~ 15991969 (-) | True | lzts3b |
| XM_026910719.2 | mRNA | upstream | 87475 | 16186690 ~ 16200532 (-) | True | adra1aa |
| XM_034306377.1 | mRNA | upstream | 180087 | 16279302 ~ 16288750 (-) | True | LOC113524473 |
| XM_026910771.2 | mRNA | upstream | 189843 | 16289058 ~ 16293702 (-) | True | tmem127 |
| XM_026910765.2 | mRNA | upstream | 202992 | 16302207 ~ 16305565 (-) | True | ufd1l |
| XM_026910776.2 | mRNA | upstream | 224425 | 16323640 ~ 16325725 (-) | True | cldn5a |
| TU157827 | other | downstream | 143994 | 15950325 ~ 15952679 (-) | False | ccl27a |
| trnad-guc_2 | other | downstream | 761006 | 15335596 ~ 15335667 (-) | True | trnad-guc_2 |
| TU157316 | other | downstream | 916549 | 15177789 ~ 15180124 (-) | False | LOC113532496 |
| XR_003403097.2 | other | downstream | 1371990 | 14332392 ~ 14724683 (-) | False | grid2 |
| XR_004578552.1 | other | downstream | 1911736 | 14178891 ~ 14184937 (-) | False | hsd17b3 |
| TU159072 | other | upstream | 1968041 | 18067256 ~ 18084483 (-) | False | ikbkb |
| TU159186 | other | upstream | 2154370 | 18253585 ~ 18262218 (-) | False | dynll1 |
| TU159181 | other | upstream | 2160370 | 18259585 ~ 18261956 (-) | False | dynll1 |
| TU160210 | other | upstream | 3891648 | 19990863 ~ 19993744 (-) | False | LOC113533329 |
| TU160320 | other | upstream | 3941082 | 20040297 ~ 20040688 (-) | True | G135737 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| grasscarp (Ctenopharyngodon idella) | TU413450 | True | 2373 | lncRNA | 0.36 | 4 | CI01000155 | 286795 ~ 290882 (-) |
| rainbow trout (Oncorhynchus mykiss) | TU574583 | False | 1377 | lncRNA | 0.38 | 2 | NC_048570.1 | 40204920 ~ 40207158 (+) |
| eurasian perch (Perca fluviatilis) | TU86168 | False | 1408 | lncRNA | 0.40 | 2 | NC_053117.1 | 25014305 ~ 25016880 (-) |
| striped catfish (Pangasianodon hypophthalmus) | TU413450 | False | 1383 | lncRNA | 0.40 | 3 | NC_047618.1 | 3561666 ~ 3607376 (-) |
| bowfin (Amia calva) | TU103463 | True | 1383 | lncRNA | 0.43 | 2 | CM030129.1 | 40576746 ~ 40578776 (+) |
| tiger barb (Puntius tetrazona) | TU88765 | True | 1049 | lncRNA | 0.40 | 2 | NC_056706.1 | 723190 ~ 725000 (-) |
