RNA id: TU86168


Basic Information

Item Value
RNA id TU86168
length 1408
lncRNA type sense_over
GC content 0.40
exon number 2
gene id rnf165b
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 25001323 ~ 25016921 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCTGCTTTTGTCAACGACAACCCGGGCGAGTCAGACAGTCGTTTCGTTGGGTTTGCCTGTGGTGCTAGCCAGCCAGCAACAACCAGCCGCCTGAATGTAGATCCGCATGGGCTACTTCACCTCTTTCTCACCAGATAACCCAGCGGAATCATAAGATAAGGATCCCAGGATGGTCTTAGTGCATGTCGGATATCTGGTTCTTCCTGTATTCGGCTCAGTAAGAAACAGAGCTAATGATCATCTGCTGCTGTGTGGTGTGGCGTGGCCTCTGCCTGTTCTCTGCATTTAGCTGTATTGTGAATCCCTTCTTCATTTCCTCTTTCCATCAGAAGACGACATTGGTATTAAAAAGCACCCCCTCCCAAGATGTATTTAGCCATAGACTTTCCATGTTGAGCTGACTAAAACAATAGCTAACACCTAGAACAGAGcaccttttttgtctttttttctgtcaaattGCTGTAGCACTGAGTAAACATTTTAGCTCCTTTTTTAGATATCAGTTAAATGTCATTGTGTACCTCCCATCCAGTCTTGATAGACAACATGCTGTAAATTCCTGTAAAGTGGATACATTTTGCATGATCTTAAATACTGCACTGCATTGTTGAACACCAGAATTCGGCTCATCTTCCTTCTCTTCACACAAGGTGCAATGTACATGATTGAAGTGacctataatttaaaaaaacaaaacatgcaagtaATTGGAACCTAATGCATGCCGTTTTATTGTTAAAACCCAGCATTCCAGCAAATGCTGTCATGTGATCACTTGAAATAATTGAAGGTACACTGCACCTGCACACAACAACCTGCCATAACCGTCTCCATTTTTGTGTAATCCTTTTTGTTCCCTTTGCAAATTTCAAGCTTCGAATCACACTGAATTGTCAGGGCTGTTAGCCCCTTACAGGCAAATGAAACTCTAAACATTTTCGTAAGCAAAACATGCTCACTGGTGGTTCATCACTTCCCAATTTTCCCCACTAACATAAGGCCAAAATGCTATCCATTTCACAGGGATGCCTATTTTCCTGCACTGCTAAAGAGATCCTCTATTAGTAATAACGTCTTTATTGTTTGGTTGTGGTCTCTCTTTACCTTTTGTTCTGGTAATAGTACTTTCAATGCATGGTCACATTTATGATtcataattttttgtttttgtttttctacatTGACTAGTGAAAATCCAATGTAATCTTTCTGTAGTAAAGATGTACCCTGCTGTACTGAAATCATGTGCTGTAGCCAACACGTCTGCTCATTGGATGCtgcttttgttctttttaacCCTATATGGAGCATGGTGGGCCTTGCCTTCAGtctatgttgtttatttttgttgcatGGATTTATACtattattacaaacaaacaagaaaaaaaaaacacaaattcca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86132 lncRNA downstream 76865 24876624 ~ 24937440 (-) False lzts3b
TU86042 lncRNA downstream 720349 24293653 ~ 24293956 (-) True G64250
TU86041 lncRNA downstream 720706 24293015 ~ 24293599 (-) True G64249
TU86025 lncRNA downstream 799216 24213895 ~ 24215089 (-) True G64234
TU86003 lncRNA downstream 840629 24173462 ~ 24173676 (-) True G64214
XR_005639413.1 lncRNA upstream 28015 25044895 ~ 25047047 (-) True LOC120560057
TU86263 lncRNA upstream 74090 25090970 ~ 25093363 (-) False mapkapk5
TU86426 lncRNA upstream 553094 25569974 ~ 25573095 (-) False G64541
TU86427 lncRNA upstream 596633 25613513 ~ 25625499 (-) True G64541
TU86583 lncRNA upstream 907689 25924569 ~ 25924785 (-) True G64673
XM_039803752.1 mRNA downstream 91495 24920760 ~ 24922810 (-) True oxt
XM_039803753.1 mRNA downstream 91537 24920760 ~ 24922768 (-) False oxt
XM_039803218.1 mRNA downstream 103864 24909473 ~ 24910441 (-) True LOC120560572
XM_039804016.1 mRNA downstream 124717 24876595 ~ 24889588 (-) True lzts3b
XM_039803213.1 mRNA downstream 139379 24868508 ~ 24874926 (-) False ubox5
XM_039804143.1 mRNA upstream 10661 25027541 ~ 25034394 (-) True LOC120561162
XM_039802160.1 mRNA upstream 19182 25036062 ~ 25044892 (-) True LOC120560055
XM_039804276.1 mRNA upstream 31542 25048422 ~ 25065206 (-) False rnf122
XM_039804275.1 mRNA upstream 31542 25048422 ~ 25065206 (-) True rnf122
XM_039802784.1 mRNA upstream 49880 25066760 ~ 25080769 (-) False LOC120560369
TU85750 other downstream 1733219 23274920 ~ 23281086 (-) False smim15
TU85596 other downstream 2181216 22830195 ~ 22833089 (-) True G63882
XR_005639466.1 other downstream 3387398 21616223 ~ 21626907 (-) False rmi1
TU85094 other downstream 4322026 20691878 ~ 20692279 (-) True G63487
TU84919 other downstream 4732094 20270777 ~ 20282211 (-) True G63345
TU86268 other upstream 49965 25066845 ~ 25070763 (-) False LOC120560369
XR_005639498.1 other upstream 473085 25489965 ~ 25547852 (-) False commd10
TU86475 other upstream 642695 25659575 ~ 25663370 (-) False mrps36
TU86476 other upstream 642695 25659575 ~ 25663370 (-) False mrps36
TU86477 other upstream 642695 25659575 ~ 25663370 (-) True mrps36

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU413450 True 2373 lncRNA 0.36 4 CI01000155 286795 ~ 290882 (-)
rainbow trout (Oncorhynchus mykiss) TU157943 True 235 lncRNA 0.41 1 NC_048566.1 36155002 ~ 36155236 (+)
striped catfish (Pangasianodon hypophthalmus) TU157943 False 1494 lncRNA 0.40 2 NC_047602.1 16096673 ~ 16099215 (-)
striped catfish (Pangasianodon hypophthalmus) TU413450 False 1383 lncRNA 0.40 3 NC_047618.1 3561666 ~ 3607376 (-)
mexican tetra (Astyanax mexicanus) TU73665 False 1418 lncRNA 0.37 2 NC_035902.1 26776566 ~ 26779698 (-)