rnf122 (rnf122)


Basic Information

Item Value
gene id rnf122
gene name rnf122
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 25048422 ~ 25065206 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039804275.1
TTTCTCACACAGATGCTGCTGCTGGGTCAGTGTGATGCCGTCTATTAATAATAACAGAGTCAAAAGAACCACAgcgaggaggagaagaagaagaaggggaaaATCCACATCACCGCTTCTCCTTTTTTCAACCCGCAGGGATGAGCcaaataatgtgacataacCCTGCTTCAACTTTCGACAAAACGCCTTTATCCACCTTTTTATTCGTCTTTTTTACAGGTGCCATTGTCTCGTTCACCTTTCACACTGCTGGCATACAGTCAGTGACTCTACTCGGGGCACTTTATTGGGGTCATCCATCCGCACGGGCGGCTGCGGATTGTTGGTAAACACGAATCGGATCCCGCCGACAAGGACTCCCTCTGGTGCATTGATGCACCCGTTTCAGTGGTGTAACGGGTGCTTCTGTGGTCTGGGACTGGTTTACTCCAACAAGTCGTGCACCATGCCACCCATCACCTTCCAGGACCTGCCTCTTAACATCTACATGGTCATTTTTGGGACCGGCATCTTTGTCTTCATCCTGAGCCTCATTTTCTGCTGTTACTTCATCAGCAAACTACGACACCAAGCCCAGAGTGAGCGGTTTGGATACAGAGAGGTGGTTTTAAAAGGAGATCCAAAAAAGTTGAATCTTCATGGGCAGACGTGCGCCGTGTGTCTGGAGGACTTCAAAGTCAAAGACGAGCTGGGAGTGTTGCCATGCCAACATGCTTTTCACAGGAAGTGTCTGGTAAAGTGGTTGGAGGTGCGCTGCGTCTGCCCCATGTGCAACAAACCCATAGCAGGTCCCCCGGAGCAGCACCACAGCATAGGGACTCTTTTGGATGAACTGGTGTAACCTCTCAGCTCCTGCCAGCCTGGGTGGGATGGCGCCGCCCGGGCCACACCAGCCGATATAAGTTAGCGACCAACAGAAGAGGGACACTGTTATGCTGTTACACCATTGGGGTAACCTGGTCACCACCAGGAGAAAGGGTCTGAAGGATGCTGTTGCATAGCAACCATCTCAGAGATGGCAACTCATCACCTTGAGGCGTCTGAGAGATTATCTCCAGCCACCCACACATCACTCCACCACTCTTCTTTTAAGATCCCCCTCTTCACCCGCTCTGTCACATCTTTTGTTGTTGCCTCCAGTCAGGTTAATGGCACCACTGAAGAAGAGTTTCATTTTTCACGGCATTGTGGACAAGTGAGTGTTGAAGGATGGCAGCATTGGGCAGGCGGCACTGAATGTATGAGTGTTTATGTCACTGTGGTCACTGATGTGAAATGATATCAATATTGGCTGAGGTTATTAAAACTCTTGCTAAATTATTTCAGACAAGAGGTTTGAACACAAAAGTAGAACAAGGGTTTAACAAAAATGTGTGGAGCCGTCTAGAAACGTCCAGAAGAGATTAAATAATACTATGGTGAAGACACAGACAGGGTTGATTAAAACAGATTTCAAggaaattaaaaacataaaaaaaagatttgtgcctaAGATTGTGAGAGTGTGACTTCAATTCACTGAAGTCACACTGGTTAAAAAAATGATGGAAAAGGTGGATTCAGGTGTCATCAGTGGGACCTAAATCGTTCATATTAGAAGAAGAAGCTCAAGCTGTAGTCCACATGTAGCAAAGTAATCAGTATTTCCATCAAGTCAAACCAATAATTCTTTTGCTGATATGCGAAACTGATACTGATGTGTAAAATTCATGTCGGTGCCCACCTCTACCGTGATATCATGTGTGTTCTATGTGTATTTTTCCCACTGGGATGTTTTATTGTTCAGACATGTTTTGACTGTGTTAATATACAGTAGATGAAAGCAACTGACACGTCCTGCCTTCCACTCTAACAGTTTGGTTATTTGTTGTaatatgttaatgttttttAGATACTGCACTTTAAAttcacataaaaacaaacagccTTTGTTCTTCTAAAATGTTAGACTAAGGTTTGGATGCAGCACTTTTTTTCATGTGTGGTGAATCTTTTATAAAAGTCTGTGAAGTATCTGAGATTTAGCTTCATCTGAAGAGAAGGGAAGCAGCAGTGCAGAGCCTCGGTGTTCTATGAATTCATCTGGGAAGCAATTTATATCTCACTTTCATACATTTCTGTGGGATTATTGCTGATGATTCTGCTTTTGCAttcctcagtcattgtttttttttgtgtgtgtgattaacaGCTATTCAGAAAGCGAAACACTGCCTAAAATTGAGCACAAAACTCACAGAAGCACATTGTCCAGATACAGAAAACTCCTGCACCGTAATTAAAAGCCAAACACCGACATGTGAGGCTGTTGAATTCACATGAGTCTGCGtgccatgaaaagaaaaaaaagaaaatgtcgaGAAGAGATTTCTTTACTCTGATTCTGGCCACATTCCACATTTTATAATCCAAACAGATGTAAATAACTTcaaacaataataaatacagTTGTCTGTTTTGTTCA
>XM_039804276.1
TTTCTCACACAGATGCTGCTGCTGGGTCAGTGTGATGCCGTCTATTAATAATAACAGAGTCAAAAGAACCACAgcgaggaggagaagaagaagaaggggaaaATCCACATCACCGCTTCTCCTTTTTTCAACCCGCAGGGATGAGCcaaataatgtgacataacCCTGCTTCAACTTTCGACAAAACGCCTTTATCCACCTTTTTATTCGTCTTTTTTACAGGTGCCATTGTCTCGTTCACCTTTCACACTGCTGGCATACAGTCAGTGACTCTACTCGGGGCACTTTATTGGGGTCATCCATCCGCACGGGCGGCTGCGGATTGTTGGTAAACACGAATCGGATCCCGCCGACAAGGACTCCCTCTGGTGCATTGATGCACCCGTTTCAGTGGTGTAACGGGTGCTTCTGTGGTCTGGGACTGGTTTACTCCAACAAGTCGTGCACCATGCCACCCATCACCTTCCAGGACCTGCCTCTTAACATCTACATGGTCATTTTTGGGACCGGCATCTTTGTCTTCATCCTGAGCCTCATTTTCTGCTGTTACTTCATCAGCAAACTACGACACCAAGCCCAGAGTGAGCGGTTTGGATACAGAGAGGTGGTTTTAAAAGGAGATCCAAAAAAGTTGAATCTTCATGGGACGTGCGCCGTGTGTCTGGAGGACTTCAAAGTCAAAGACGAGCTGGGAGTGTTGCCATGCCAACATGCTTTTCACAGGAAGTGTCTGGTAAAGTGGTTGGAGGTGCGCTGCGTCTGCCCCATGTGCAACAAACCCATAGCAGGTCCCCCGGAGCAGCACCACAGCATAGGGACTCTTTTGGATGAACTGGTGTAACCTCTCAGCTCCTGCCAGCCTGGGTGGGATGGCGCCGCCCGGGCCACACCAGCCGATATAAGTTAGCGACCAACAGAAGAGGGACACTGTTATGCTGTTACACCATTGGGGTAACCTGGTCACCACCAGGAGAAAGGGTCTGAAGGATGCTGTTGCATAGCAACCATCTCAGAGATGGCAACTCATCACCTTGAGGCGTCTGAGAGATTATCTCCAGCCACCCACACATCACTCCACCACTCTTCTTTTAAGATCCCCCTCTTCACCCGCTCTGTCACATCTTTTGTTGTTGCCTCCAGTCAGGTTAATGGCACCACTGAAGAAGAGTTTCATTTTTCACGGCATTGTGGACAAGTGAGTGTTGAAGGATGGCAGCATTGGGCAGGCGGCACTGAATGTATGAGTGTTTATGTCACTGTGGTCACTGATGTGAAATGATATCAATATTGGCTGAGGTTATTAAAACTCTTGCTAAATTATTTCAGACAAGAGGTTTGAACACAAAAGTAGAACAAGGGTTTAACAAAAATGTGTGGAGCCGTCTAGAAACGTCCAGAAGAGATTAAATAATACTATGGTGAAGACACAGACAGGGTTGATTAAAACAGATTTCAAggaaattaaaaacataaaaaaaagatttgtgcctaAGATTGTGAGAGTGTGACTTCAATTCACTGAAGTCACACTGGTTAAAAAAATGATGGAAAAGGTGGATTCAGGTGTCATCAGTGGGACCTAAATCGTTCATATTAGAAGAAGAAGCTCAAGCTGTAGTCCACATGTAGCAAAGTAATCAGTATTTCCATCAAGTCAAACCAATAATTCTTTTGCTGATATGCGAAACTGATACTGATGTGTAAAATTCATGTCGGTGCCCACCTCTACCGTGATATCATGTGTGTTCTATGTGTATTTTTCCCACTGGGATGTTTTATTGTTCAGACATGTTTTGACTGTGTTAATATACAGTAGATGAAAGCAACTGACACGTCCTGCCTTCCACTCTAACAGTTTGGTTATTTGTTGTaatatgttaatgttttttAGATACTGCACTTTAAAttcacataaaaacaaacagccTTTGTTCTTCTAAAATGTTAGACTAAGGTTTGGATGCAGCACTTTTTTTCATGTGTGGTGAATCTTTTATAAAAGTCTGTGAAGTATCTGAGATTTAGCTTCATCTGAAGAGAAGGGAAGCAGCAGTGCAGAGCCTCGGTGTTCTATGAATTCATCTGGGAAGCAATTTATATCTCACTTTCATACATTTCTGTGGGATTATTGCTGATGATTCTGCTTTTGCAttcctcagtcattgtttttttttgtgtgtgtgattaacaGCTATTCAGAAAGCGAAACACTGCCTAAAATTGAGCACAAAACTCACAGAAGCACATTGTCCAGATACAGAAAACTCCTGCACCGTAATTAAAAGCCAAACACCGACATGTGAGGCTGTTGAATTCACATGAGTCTGCGtgccatgaaaagaaaaaaaagaaaatgtcgaGAAGAGATTTCTTTACTCTGATTCTGGCCACATTCCACATTTTATAATCCAAACAGATGTAAATAACTTcaaacaataataaatacagTTGTCTGTTTTGTTCA

Function

symbol description
rnf122 Predicted to enable ubiquitin protein ligase activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endomembrane system. Orthologous to human RNF122 (ring finger protein 122).

NR:

description
PREDICTED: RING finger protein 122 isoform X1

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K15699 RNF122; RING finger protein 122

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039804275.1 True 2467 mRNA 0.43 6 25048422 25065206
XM_039804276.1 False 2464 mRNA 0.43 6 25048422 25065206

Neighbor

gene id symbol gene type direction distance location
LOC120560055 LOC103362725 coding downstream 3530 25036062 ~ 25044892 (-)
LOC120561162 LOC101474940,LOC102208632,LOC102289757,LOC104920829,LOC103362721 coding downstream 14028 25027541 ~ 25034394 (-)
oxt LOC101478568,LOC104967804,LOC104920809,LOC102782130 coding downstream 125612 24920760 ~ 24922810 (-)
LOC120560572 fabp1 coding downstream 137981 24909473 ~ 24910441 (-)
ubox5 NA coding downstream 173496 24868508 ~ 24874926 (-)
sh2b3 sh2b3,LOC104965654 coding upstream 81334 25146540 ~ 25208061 (-)
pheta1 fam109a,LOC102789093 coding upstream 145342 25210548 ~ 25215393 (-)
prr16 prr16 coding upstream 154142 25219348 ~ 25231908 (-)
dmxl1 dmxl1 coding upstream 194735 25259941 ~ 25320087 (-)
LOC120560634 ap3s1 coding upstream 488212 25553418 ~ 25564593 (-)
LOC120560057 NA non-coding downstream 1375 25044895 ~ 25047047 (-)
G64250 NA non-coding downstream 754466 24293653 ~ 24293956 (-)
G64249 NA non-coding downstream 754823 24293015 ~ 24293599 (-)
G64234 gadd45g,LOC102775619 non-coding downstream 833333 24213895 ~ 24215089 (-)
G64214 NA non-coding downstream 874746 24173462 ~ 24173676 (-)
G64541 cdo1 non-coding upstream 504768 25569974 ~ 25625499 (-)
G64673 NA non-coding upstream 859363 25924569 ~ 25924785 (-)
G64693 NA non-coding upstream 886328 25951534 ~ 25952579 (-)
G64730 LOC104958878,LOC103357146,LOC107393839,LOC106513646,LOC107094516,LOC102798825 non-coding upstream 1113943 26179149 ~ 26180205 (-)
G64735 NA non-coding upstream 1126778 26191984 ~ 26245476 (-)
rnf165b LOC102783683,LOC101475525,LOC103362723,LOC103470112,LOC101070551,LOC100705592,LOC107086292,LOC106944956,LOC103141773,LOC106924720 other downstream 31501 25001323 ~ 25016921 (-)
lzts3b lzts3,LOC102793849 other downstream 110982 24876595 ~ 24937440 (-)
foxd5 LOC103358907,LOC104942959 other downstream 1661117 23384718 ~ 23387305 (-)
smim15 smim15,LOC106580593,LOC103398561 other downstream 1767294 23274919 ~ 23281128 (-)
G63882 LOC104956296,LOC101068944 other downstream 2215333 22830195 ~ 22833089 (-)
LOC120560369 LOC104950284,LOC103362719 other upstream 1554 25066760 ~ 25080769 (-)
mapkapk5 mapkapk5 other upstream 24729 25089935 ~ 25105430 (-)
commd10 commd10,LOC102791033 other upstream 423276 25488482 ~ 25547852 (-)
mrps36 mrps36 other upstream 594345 25659551 ~ 25663405 (-)
G64821 NA other upstream 1374828 26440034 ~ 26447513 (-)

Expression


Co-expression Network