LOC120560055 (LOC103362725)


Basic Information

Item Value
gene id LOC120560055
gene name LOC103362725
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 25036062 ~ 25044892 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039802160.1
GGtgtttacgtttttttttttttaaagataatccACCATGTTTAAACGGTGGCTTTTAGCCCTTTCGGCCCGGGTCGGCCTCACTGTGCTGGGCCTCTGCTGCTGTCTGTCCCTGTTCTACCTCCTCGCCTGTAAACCCACGTCTCACAGCAGCCAGCAGTCTCTTCTGTGGTCTGGTGGGGCCACCAGTAAAGAAGGATACATGGCCTTGTTGCAGGAGAGGGAGGACTCTCACAGACATTACATCAACAGCCTGACGAAGCAGATAGCCCAGCTGAAAGAAGCTCTCCAGGAGAGGACGCAGCAGCTTCAAGAGTCCCTGGAGAAAGCTAAAACAAGAGGGATTCTGCCTCAGGGTCTGGAGAGTCTGCACAAAACCCCGACACAGACTGACCTTAAGGATTTCCTACGCTCCCAGCTGAACCAGGCAGAGGTGAACTCAGGTGTAAAGCTGCCCAGCGAATATGCAGTGATTCCTTTTGACACTTTCACCCTGCGGAGGGTGTACCAGCTGGAGACAGGGCTGACAAGGCACCCAGAGGAGAGGCCTGTGAGGAGAGACCACCGAGACGAGCTGATAAGTACAGTGGAAACAGCTCTGCACGTCCTGAACGGACCTCAGCAACACACTGACAACACCAGACGGAAGCGCACATACTCCCCTTCAGACTTCATAGAGGGTTTGACCCGTACAGAGCGGGACAGAGGAACCGTTTACGAGCTGATGTTTAAAGGCGCTGGCCCGCAGGACTTCACACAGCTCGTGCTCTTCAGGCCATTTGGTCCTGTGATGAAGGTGAAGAGCGAGAGTGTGGACACGCGCAGCATGCTCATCAACATCATCGTACCTCTTTCCAAGAGGCCGGACGCATTCAGGCAGTTCATCAACAACTTCAGAGAGGTTTGCATCCGGCTGGACGGCAGGGTGCATCTGACTGTGGTCTACTTTGGTCGCGATCAGATAGACCAGGTGAAAGCCATGCTGGACCAGACCACCAGAGAGACTCGGTTCAGGAGCTTCACTTTGATCCAGCTGAATGAGGAGTTTTCTCGTGGTCGGGGCTTAGAAGTGGGCGCCAGGGCTTGGAGGCGCAGTCAGAATGTCCTGCTCTTCTTCTGTGATGTTGACATCCACTTTACCGCCGACTTCTTAACTTCCTGTCGTCTCAACGCTGAACCTGGTAAGAAAGTGTACTATCCAGTGCTCTTTAGCCAGTACAACCCATCTATTATCTATAGTAATCAGACACTTCTACCCTCTGTTCAACAACAACTGGTGATAAAGAAGGAAACTGGATTCTGGAGAGACTTTGGGTTTGGCATGACATGCCAGTACAGGTCTGATTTCCTCAACATAGGGGGTTTTGACCGTAACATCAAAGGTTGGGGGTTGGAGGATGTGCACCTGTACAGGAAGTACCTTCACAGTAAGCTGATGGTGATTCGCTCTCCGTCCAGAGGCCTTTTCCACTTGTGGCACGAGAAGAACTGTGCAGACGAGCTCCCTCCAGACAAATACAAGATGTGTATGCAGACCAAAGCCATGAGCGAAGCCTCGCACGGCCAGCTGGGGGAGCTGTTTTTCAAACGACAGATTGAGTTTCATTTGAGCTCCCAGAAGCAGATGGACAGAGGAACATGATGAGGACAGTATAATAGGCTCTGGTGATGTTATTAGttactgtttgtgtatgttCTTGTTCTGGTTTACTTACATGAACTATTGAGCTTCAAAGCTTGATTTTTCTCCAAATTCACACATAAACTTGACTGTAAACTTGACATAATGACTGATATGTTTTGTGTGAATAAAATAATTAACTATGTGATCTAATTGTGtactttatgttttatttccatAGGACTGTCACAAAGagaatatggaaaaaaaattattttttacagtctataacTTTTTCTGTCATGCCAACGCTGGAAGcagcaaaaaatatgtttatatcaACCAGTAACATTACAGGGGAAATAACATTTTCTTGCATCTTTCTCATTCATTTGTTTCTGTTGTGCAAAATGCAAATTATCATACACAAAAGAACAAAGACTCTCTTGCTATACTGAAAGTGAGATACACGTATTCgtattttggtaacactttataataagggTACAAATCATATACTAAATGCTTAACTAATGCATGACTCATGATGATTTAATGCATGAATTAATGTAGGAtgtattatgaattatttttgcTCACCATTAACAAATGAT

Function

NR:

description
PREDICTED: chondroitin sulfate N-acetylgalactosaminyltransferase 1-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039802160.1 True 2235 mRNA 0.46 9 25036062 25044892

Neighbor

gene id symbol gene type direction distance location
LOC120561162 LOC101474940,LOC102208632,LOC102289757,LOC104920829,LOC103362721 coding downstream 1668 25027541 ~ 25034394 (-)
oxt LOC101478568,LOC104967804,LOC104920809,LOC102782130 coding downstream 113252 24920760 ~ 24922810 (-)
LOC120560572 fabp1 coding downstream 125621 24909473 ~ 24910441 (-)
ubox5 NA coding downstream 161136 24868508 ~ 24874926 (-)
LOC120560571 LOC100708704 coding downstream 168347 24866022 ~ 24867715 (-)
rnf122 rnf122 coding upstream 3530 25048422 ~ 25065206 (-)
sh2b3 sh2b3,LOC104965654 coding upstream 101648 25146540 ~ 25208061 (-)
pheta1 fam109a,LOC102789093 coding upstream 165656 25210548 ~ 25215393 (-)
prr16 prr16 coding upstream 174456 25219348 ~ 25231908 (-)
dmxl1 dmxl1 coding upstream 215049 25259941 ~ 25320087 (-)
G64250 NA non-coding downstream 742106 24293653 ~ 24293956 (-)
G64249 NA non-coding downstream 742463 24293015 ~ 24293599 (-)
G64234 gadd45g,LOC102775619 non-coding downstream 820973 24213895 ~ 24215089 (-)
G64214 NA non-coding downstream 862386 24173462 ~ 24173676 (-)
G64209 NA non-coding downstream 881383 24151066 ~ 24154679 (-)
LOC120560057 NA non-coding upstream 3 25044895 ~ 25047047 (-)
G64541 cdo1 non-coding upstream 525082 25569974 ~ 25625499 (-)
G64673 NA non-coding upstream 879677 25924569 ~ 25924785 (-)
G64693 NA non-coding upstream 906642 25951534 ~ 25952579 (-)
G64730 LOC104958878,LOC103357146,LOC107393839,LOC106513646,LOC107094516,LOC102798825 non-coding upstream 1134257 26179149 ~ 26180205 (-)
rnf165b LOC102783683,LOC101475525,LOC103362723,LOC103470112,LOC101070551,LOC100705592,LOC107086292,LOC106944956,LOC103141773,LOC106924720 other downstream 19141 25001323 ~ 25016921 (-)
lzts3b lzts3,LOC102793849 other downstream 98622 24876595 ~ 24937440 (-)
foxd5 LOC103358907,LOC104942959 other downstream 1648757 23384718 ~ 23387305 (-)
smim15 smim15,LOC106580593,LOC103398561 other downstream 1754934 23274919 ~ 23281128 (-)
G63882 LOC104956296,LOC101068944 other downstream 2202973 22830195 ~ 22833089 (-)
LOC120560369 LOC104950284,LOC103362719 other upstream 21868 25066760 ~ 25080769 (-)
mapkapk5 mapkapk5 other upstream 45043 25089935 ~ 25105430 (-)
commd10 commd10,LOC102791033 other upstream 443590 25488482 ~ 25547852 (-)
mrps36 mrps36 other upstream 614659 25659551 ~ 25663405 (-)
G64821 NA other upstream 1395142 26440034 ~ 26447513 (-)

Expression


Co-expression Network