RNA id: XM_026915289.2


Basic Information

Item Value
RNA id XM_026915289.2
length 478
RNA type mRNA
GC content 0.44
exon number 4
gene id LOC113527457
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 16011028 ~ 16012661 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aaaagtcagaaaagttATTAATTTCCCATCTCATTGGTCCTGTCACAATGTCCTTCTCTGGAAAATATCAGCTGGAAAGCCAAGAGGGCTTTGTGCCTTTCATGAAGGCTATGGGTCTTCCTGATGACCTCATCGAGAAAGGCAAAGACATCAAGAGTGTCTCCGAGATCGAACAGAATGGAGATAACTTCAAAGTGACAGTAACCACAGGGAGCAAAGTTATGGTTAACTCCTTCACCGTAGGACAAGAGTGTGAACTGGAGACAATGACTGGAGAAAAAGTCAAGGCCATAGTGACGAAAGAGGGCAACAagctgaagacaaatctgaagggtATCGACTCAGTCACAGAGCTTGTGGACGCCAACACAATTGTGCATacCACGACTGTGGGCAACGTGGTCCTCAAGACAACCAGCAAACGCATGTCATGATAAACACTGGTCTTTTTAAATATGATTGAGTACATTTTTCCACA

Function

GO:

id name namespace
GO:0006810 transport biological_process
GO:0005215 transporter activity molecular_function
GO:0008289 lipid binding molecular_function

KEGG:

id description
K08750 FABP1, L-FABP; fatty acid-binding protein 1, liver

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157912 lncRNA downstream 2701 15999008 ~ 16008327 (-) True G133664
TU157913 lncRNA downstream 2701 15999008 ~ 16008327 (-) False G133664
TU157914 lncRNA downstream 9536 16000832 ~ 16001492 (-) True G133665
TU157791 lncRNA downstream 88944 15921276 ~ 15922084 (-) True G133584
TU157787 lncRNA downstream 104426 15906282 ~ 15906602 (-) True G133580
TU157925 lncRNA upstream 31601 16044262 ~ 16044582 (-) True G133676
TU157944 lncRNA upstream 83854 16096515 ~ 16099215 (-) False rnf165b
TU157943 lncRNA upstream 84012 16096673 ~ 16099215 (-) False rnf165b
TU157950 lncRNA upstream 104103 16116764 ~ 16118223 (-) True G133698
TU157949 lncRNA upstream 107696 16120357 ~ 16124737 (-) True G133697
XM_034306262.1 mRNA downstream 5973 16003314 ~ 16005055 (-) True LOC117597774
XM_026915215.2 mRNA downstream 19040 15980165 ~ 15991988 (-) False lzts3b
XM_026915207.2 mRNA downstream 19059 15980165 ~ 15991969 (-) True lzts3b
XM_026915265.2 mRNA downstream 34227 15972632 ~ 15976801 (-) True sfr1
XM_034306264.1 mRNA downstream 42349 15964657 ~ 15968679 (-) True ubox5
XM_034306263.1 mRNA upstream 4598 16017259 ~ 16018705 (-) True LOC117597775
XM_026915276.2 mRNA upstream 7088 16019749 ~ 16021904 (-) True avp
XM_026916327.2 mRNA upstream 72408 16085069 ~ 16099247 (-) True rnf165b
XM_026910719.2 mRNA upstream 174029 16186690 ~ 16200532 (-) True adra1aa
XM_034306377.1 mRNA upstream 266641 16279302 ~ 16288750 (-) True LOC113524473
TU157827 other downstream 58349 15950325 ~ 15952679 (-) False ccl27a
trnad-guc_2 other downstream 675361 15335596 ~ 15335667 (-) True trnad-guc_2
TU157316 other downstream 830904 15177789 ~ 15180124 (-) False LOC113532496
XR_003403097.2 other downstream 1286345 14332392 ~ 14724683 (-) False grid2
XR_004578552.1 other downstream 1826091 14178891 ~ 14184937 (-) False hsd17b3
XR_004578582.1 other upstream 83971 16096632 ~ 16099234 (-) False rnf165b
TU159072 other upstream 2054595 18067256 ~ 18084483 (-) False ikbkb
TU159186 other upstream 2240924 18253585 ~ 18262218 (-) False dynll1
TU159181 other upstream 2246924 18259585 ~ 18261956 (-) False dynll1
TU160210 other upstream 3978202 19990863 ~ 19993744 (-) False LOC113533329

Expression Profile