Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU157780 |
| length | 424 |
| lncRNA type | inter_gene |
| GC content | 0.40 |
| exon number | 2 |
| gene id | G133576 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047602.1 |
| NCBI id | CM018548.1 |
| chromosome length | 30442583 |
| location | 15904862 ~ 15905968 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU157776 | lncRNA | downstream | 2553 | 15854000 ~ 15902309 (-) | True | G133573 |
| TU157771 | lncRNA | downstream | 96431 | 15780296 ~ 15808431 (-) | True | G133568 |
| TU157755 | lncRNA | downstream | 276914 | 15574831 ~ 15627948 (-) | True | G133552 |
| XR_004578614.1 | lncRNA | downstream | 432596 | 15465244 ~ 15472266 (-) | True | LOC117597848 |
| TU157567 | lncRNA | downstream | 439401 | 15465262 ~ 15465461 (-) | False | LOC117597848 |
| TU157787 | lncRNA | upstream | 314 | 15906282 ~ 15906602 (-) | True | G133580 |
| TU157791 | lncRNA | upstream | 15308 | 15921276 ~ 15922084 (-) | True | G133584 |
| TU157912 | lncRNA | upstream | 93040 | 15999008 ~ 16008327 (-) | True | G133664 |
| TU157913 | lncRNA | upstream | 93040 | 15999008 ~ 16008327 (-) | False | G133664 |
| TU157914 | lncRNA | upstream | 94864 | 16000832 ~ 16001492 (-) | True | G133665 |
| XM_026916783.2 | mRNA | downstream | 5414 | 15748391 ~ 15899448 (-) | True | fbxl17 |
| XM_026916757.2 | mRNA | downstream | 5415 | 15676192 ~ 15899447 (-) | False | fbxl17 |
| XM_026916766.2 | mRNA | downstream | 5432 | 15676192 ~ 15899430 (-) | False | fbxl17 |
| XM_026916774.2 | mRNA | downstream | 5613 | 15676192 ~ 15899249 (-) | False | fbxl17 |
| XM_026924443.2 | mRNA | downstream | 281674 | 15537879 ~ 15623188 (-) | True | efna5b |
| XM_026928586.2 | mRNA | upstream | 24349 | 15930317 ~ 15945987 (-) | True | slc35d2 |
| XM_034306998.1 | mRNA | upstream | 44294 | 15950262 ~ 15952621 (-) | True | ccl27a |
| XM_034306999.1 | mRNA | upstream | 44294 | 15950262 ~ 15952617 (-) | False | ccl27a |
| XM_034306264.1 | mRNA | upstream | 58689 | 15964657 ~ 15968679 (-) | True | ubox5 |
| XM_026915265.2 | mRNA | upstream | 66664 | 15972632 ~ 15976801 (-) | True | sfr1 |
| trnad-guc_2 | other | downstream | 569195 | 15335596 ~ 15335667 (-) | True | trnad-guc_2 |
| TU157316 | other | downstream | 724738 | 15177789 ~ 15180124 (-) | False | LOC113532496 |
| XR_003403097.2 | other | downstream | 1180179 | 14332392 ~ 14724683 (-) | False | grid2 |
| XR_004578552.1 | other | downstream | 1719925 | 14178891 ~ 14184937 (-) | False | hsd17b3 |
| trnah-gug_9 | other | downstream | 2825456 | 13079335 ~ 13079406 (-) | True | trnah-gug_9 |
| TU157827 | other | upstream | 44357 | 15950325 ~ 15952679 (-) | False | ccl27a |
| XR_004578582.1 | other | upstream | 190664 | 16096632 ~ 16099234 (-) | False | rnf165b |
| TU159072 | other | upstream | 2161288 | 18067256 ~ 18084483 (-) | False | ikbkb |
| TU159186 | other | upstream | 2347617 | 18253585 ~ 18262218 (-) | False | dynll1 |
| TU159181 | other | upstream | 2353617 | 18259585 ~ 18261956 (-) | False | dynll1 |
