RNA id: XM_026916783.2


Basic Information

Item Value
RNA id XM_026916783.2
length 3436
RNA type mRNA
GC content 0.45
exon number 8
gene id fbxl17
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 15676192 ~ 15899448 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAGCAATTTGGGTTTCAGCCTGAAGTAGCGAGTTGACACACCGTTAAGGCAGCTGCTATATGTTCTTAAGACCCTGTTTGCGTTTTAATGAACTGCTCTTTACTTGGTTGTGCTGTGCACGCGGATTATGAGCGCGCGGGACGGAGCTGCTCCAACCCGCGGCAGctgctgAGCCAGTGTGAGTCATCTATATGGGCCATCTTCTCTCAACAAATGGCCTCCGCTTGAAGAAGAGACCGCAGACGCTgcgcaagaagaagaagaggaggagctgCTTTCTTCGGGGCCCGTGCATGCTCTGCTTCTTCATCCGCAGCAACAGCAGTGACAGCTTCGACGCTGAGTGCCAGTCCGACTCCAGACTGGCCAAGCTGAGCTCGCCTGAGGACTGTGCCAAATTTCTTCTGTCACCAGCCGAGTTGGCAGTGTGGGAGTGCCAGGGCCGGAGCCTGCTCTCCTCCGTGCCAGCTAGGCTCATTGGACCACCAGCGCTCTTCTGCACCGACTACTCGGAGATGGTGTGTAAGCGCAAGAGTGGCGAGCCGCAGCCACTGGCTCCATGCAAGCAGCCGCGCTGCACTTCACAGGAGACAACAGAGAGTGAAGAGGATGAGAAGAATGCCAGCCAGGCCCTACTACCCCAGCTCTGCCCACTgccttcctcctcctcgtctTCCCTCTCAGAGGAGCAGGAGAGCTCACTTGTGGGGCTTCAGGTGGACTCAGGTCATAACTTAAGCAATGACAAGAACCCTGAgatctcctcttcctcttcctcctcttgcCTTCTCACCCACAGTAGTGTGGCAGAGGAAGGCAAGAGTGCTGAGATCATGGACACGTCCCGAATCAACCACCTACCTTCGTCCATACTACTCAAGgttttctCTCACTTGTCGGTGAAGGAGCGTTGTCTTAGTGCCTCTCTGGTCTGCAAATATTGGCGTGACCTCTGCTTAGACTTCCAGTTCTGGAAGCAAATTGATCTCAGTGGGCTGAGACAAGTGAGAGATGACCTCCTCGTGAAGATTGCATCCTGGAAACAAAATGTGACGGAACTGAACATCTCAGACTGCCGGAACGTTGAGGACTATGGTGTATGCACTCTAGCCTCTCAGTGTCCTGGACTGCTGAAATACACAGCCTACCGTTGCAAACAGCTCAGTGATGCGTCTCTTTGTGCTGTGGCGTGGCATTGCCCATTGCTGCAGAAAGTGCATGTGGGAAACCAGGACAAACTGAGCGACCATGCCCTCAAACAGTTGGGTGAACACTGCCCAGAGCTGAAGGACGTACATTTTGGGCAGTGCTACAATGTCAGTGATGAGGGTCTGATAGCGCTGGCGAAGGGTTGCCCCAAACTGCAGAGGATCTACATGCAAGAAAACAAACTGGTGACTGACAGATCAGTGCAGGCGTTTGCAGAACACTGTCCAGAGCTGCAGTTTGTGGGCTTCATGGGCTGCTCGGTCACCTCACAGGGAGTTATACACCTCACCAGGCTGCGGAACCTGAGTAGTCTGGATCTCCGGCACATCTCTGAGCTGAACAACGAGACGGTGATGGAGGTGGTGAGAAATTGCCGGAACCTCAGCTCCCTCAACCTCTGCCTCAATTGGAGCATCAACGATAGcCCTTTTCCCTCGTTTGGAAGTGGATAAAATCTCATTGCTCTTTCTTGGCACTGGATCAAGCAATGTTTCTGTTCCGAAATTCATTTGGGATTCCGGCTATTGGCTTTTGCAAACCACTCAGGCCAGGAGACATCTGTTTTACTGAATTCCTAATGTCTCTGTGTCACCAGTGTCAGAGGAGCTGCTGGGAAACTCGTCTTGTGGTGTAACTTTTTCCTACAAGATGCCTGTTTTTAGTGGGGTGCTCCAAAAAATGGATTAAACTCAAGTTTGTGCCAGTGCTCTCTCAAGTTCCTGCAGactggagcaggttttcttctaggattgctCTGTATTTGTACATTCCTCAGCTCTGAAcagtttcccagtccctgctgatgaaatgCATCCCTGCaatatgatgctaccaccatcatgcttcactgtggagaTGCTGTTCTCACAGTGATGATCAGTCTTGGATTTTGGCCAAACATAGCACTTTGTGGCAAGGTCAAAaagttttggtctcatcagatcaGAGAACCTTTTTCAAGTTTGTGGAATTTgggatttcattttttttttctgaataattGCTTTCTAAAATCCAGCTTTGTGGCATTTCCAGGCTATATGTCCTGtgaacattataaaaaaaaaatggaaataatatgGCATAACTGTGACTCTGCCTAGCAaaggcctcttggttgcttctctgactaatgccctaATATGTCACTGACTCTTGGTGGATGGACTCATCAAGGTAGAGTCGCTGTTGTGCTATATTCTTTCCattgtttaataatgtatttaatggtGCTTCATGAGATGTTCAAATGTTGGgatattttacaaacaaaccctgactgatactTTTCCATTCAGCTAGTTATGTCAATTATGATGGCAACTGTTTGCACCAGATCTATTTTAGGTGTTTCATGTTTTacttataaataattttcaaattttctttCACATCAATATTATggactttaaaaatgtttttgtttttattttattttattttattttattttttttttgtgaattcaaGTCATATAATCCCAATTCAATCCAACACCACAAAATGTGGACTGTATCTGTCGTAATTTATGGAAATTATATTACACAGTGCAAAGAGTTGCATTTTTGTGCAAAGAGTagtattttttctatttaacaTACAAAACCTATGTTAGTAGGTTTGTAAATTACACAAATAGTGGAAATGCATTTGATCTGATATATAAACCTTTAGTGAATCCTTTGTCTATAAAACTGCATGTGAGGAGCAGCTCTATTGAGTCAAATATTCCTCATGTTTGCCGATTACTTGcttccattaaaaaaagaccCTTAGCCTTTTAGTGCTGAAGTGCAACTCTGACATGTTTTTCTCCCTCATGTAATCAGAaatcctacaaaaaaaaattgaattacCCTTCTTACACAATAGTTCACTCATATTGTGTACTGATTTGTTGCCACTGCCAAAAATGAGCCTGTCACGTTTTGTGCCAGTTTATCAGCTACAGCAGCTTTTCCTCACTGTTGAAACAGCAAAGGTAATGAATGCTAATCTGACTTTCTGAGCTAGTAGTGAGGaagaaaaattatattaatttgtatTGTGAGAGACATCTGAGGcatattttctgtaattaaagCTGGGTTGCATAATTGAAATACCTGCAATTTGTCATGGTATCGGGAAATTACATGCCATGATGTGAGCCATTTCTTCATTCGGCAGAATTTGTTGTTATAGACTTTTCCTCCCTTCTGCCACCTCTTCATATCCATTAGTTTAA

Function

GO: NA

KEGG:

id description
K10283 FBXL17; F-box and leucine-rich repeat protein 17

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157755 lncRNA downstream 120443 15574831 ~ 15627948 (-) True G133552
XR_004578614.1 lncRNA downstream 276125 15465244 ~ 15472266 (-) True LOC117597848
TU157567 lncRNA downstream 282930 15465262 ~ 15465461 (-) False LOC117597848
TU157540 lncRNA downstream 308721 15436985 ~ 15439670 (-) True G133360
TU157530 lncRNA downstream 323184 15424930 ~ 15425207 (-) True G133356
TU157780 lncRNA upstream 5414 15904862 ~ 15905968 (-) True G133576
TU157787 lncRNA upstream 6834 15906282 ~ 15906602 (-) True G133580
TU157791 lncRNA upstream 21828 15921276 ~ 15922084 (-) True G133584
TU157912 lncRNA upstream 99560 15999008 ~ 16008327 (-) True G133664
TU157913 lncRNA upstream 99560 15999008 ~ 16008327 (-) False G133664
XM_026924443.2 mRNA downstream 125203 15537879 ~ 15623188 (-) True efna5b
XM_026922595.2 mRNA downstream 332941 15403229 ~ 15415450 (-) True mfsd14bb
XM_026917609.2 mRNA downstream 361861 15385297 ~ 15386530 (-) True LOC113528824
XM_026928327.2 mRNA downstream 369420 15377345 ~ 15378971 (-) True zgc:101664
XM_034306504.1 mRNA downstream 373111 15364267 ~ 15375280 (-) True LOC113525393
XM_026928586.2 mRNA upstream 30869 15930317 ~ 15945987 (-) True slc35d2
XM_034306998.1 mRNA upstream 50814 15950262 ~ 15952621 (-) True ccl27a
XM_034306999.1 mRNA upstream 50814 15950262 ~ 15952617 (-) False ccl27a
XM_034306264.1 mRNA upstream 65209 15964657 ~ 15968679 (-) True ubox5
XM_026915265.2 mRNA upstream 73184 15972632 ~ 15976801 (-) True sfr1
trnad-guc_2 other downstream 412724 15335596 ~ 15335667 (-) True trnad-guc_2
TU157316 other downstream 568267 15177789 ~ 15180124 (-) False LOC113532496
XR_003403097.2 other downstream 1023708 14332392 ~ 14724683 (-) False grid2
XR_004578552.1 other downstream 1563454 14178891 ~ 14184937 (-) False hsd17b3
trnah-gug_9 other downstream 2668985 13079335 ~ 13079406 (-) True trnah-gug_9
TU157827 other upstream 50877 15950325 ~ 15952679 (-) False ccl27a
XR_004578582.1 other upstream 197184 16096632 ~ 16099234 (-) False rnf165b
TU159072 other upstream 2167808 18067256 ~ 18084483 (-) False ikbkb
TU159186 other upstream 2354137 18253585 ~ 18262218 (-) False dynll1
TU159181 other upstream 2360137 18259585 ~ 18261956 (-) False dynll1

Expression Profile