G185145


Basic Information

Item Value
gene id G185145
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 20357176 ~ 20361573 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU219105
GGCTAACCACTCAAAGTGCAGCGAGCACTCGGATCACTTCAAAAGCCCAGTCTATCAGACTGACTTGTGTCTAATGTGGCGGTTAAAGAAGAATGCACTGTTAGTCCATCATGTATGGATTATGTGTCATGGGAACACGAGTTTACTTGAAATGTATACGCAGGTAGCAATGAGCTGCTTTGCAAAAGCGATATCAGTGTTCCCGTAATATCCGCTCTGCACCATGTATATTGATTTGGAAATGAAAATCAAGattgtaaaaacagtcattgTGTTCAGCTCGTGTGCCGTAGTGCACGTTagtctttctgtgtctgtgttcgtGTTCAATTTCACATTGTTTAATAGTACTGGTTCCTCAATCACCAGGGTGGGTCAGGCTGGCACAGAGCACCGAGTTTGTTAATGCTGCCCTTAATCTCTGCCTCTCAGGAGGGCACTGTGCCTGCTCTCTCCTGCCTTTTTGGAAGAAGTGCTCTCCTAGCACTCTGCTAAGTACCACTCAGCCTGCTTAGACTGGAGAGATGGAAGTATTAGAACTGCCTCAGGCCCTCACCTTGTCTTTAATTGGTTGTCCAATCTGGGGTGGAGCACCGCTATAAAGCGCCCGGGGTCCATGATGAATTGTTGTTGTGTCATTTTCATCCCTGATGTTTATACATCCATTTATACATGTTTTGTATCATTCTAGGAAAAAGTTCATGAGGCTGTTCTTCTGCATGAAGCTAAAGTTCACTTTCATGCTGCATGTTGAGTTTCTCAAGCCTCCTAATTTGCCTCCGATAAACTTTTGATACAAATATTCAGTTTTTTGAAATGCTGTAAAAGGCACAATATTAAGGATTAACAGAAAATCTTTGGCTGAAAAGGAGTAAAAATGCAGAgaatgcatcacaccaccccggcattgattatttccctacaacagcatgcccaAAAtacttttattcctcttacaccacagcaaacagacaatgaatttttatttattaatgaatgacatgccatacttttattttacttaccTTTATGTTGTGGAAGTGtccacaaaatgtaaaaagctaTGAACAGCTGTTCCTGTTTAAACtactaagacaaaaaatttgcagtttgtcatgttcctgTAAAATACAAagtactgaagactttcctgtggtggaaaactcaaaggaacagctttacgtcagttacaaagttctgacactggagactccttctataaatgttaaataaacatctcctgacagTAACCTGCACCAGATATctccagagctgctgttatagaaaattaatcagcaccttctggaCATACTGACGTTAGGACTTATTGACTTCATTGTAATACATctgctttttttgcttttcttttccttttttctaaataataataataataataataatagcaataaagaGAAAGGCAGAAAAAGGGTGATGGaatgatgaaaacaaaataaataaataaaaaaaatcttctgaccaatcagaatcaagaattcaacagtgctgtggtaaaatAGAAATTACACAACTGTACAAAAGCTaatcaataatatttatttttaaatccagcactttttttcttttccctgaaTTTCTGTTTACTAGAatgttaaatgcatttatacatGTGTACATGTATACATGTGATCCTgccaaaattataaaaaaagattttttcttAATAGTTCTGCAAAAAAAGAGCTACATATCATTGAATTGGATGGATCTCTTTTTTCTCGATTGTAAAAGATTGTACTTCTTTTATTGCCGTTTGTCGTTTCTTGGTTTGAAGTGCTTGGGGTGAATTCTGTTGAGTAAAATGTAGTacttattaaaagtaaaaaaaaaaaaaataaataaaaataatgcccTTTGAAGCTTTATTAGAGAAGAGGTCCAATTGctgtgcaggtttttttttttttttttttggaagaatagTAGCTGCTAGTCTAGGTCTGGATTACAGTTCAGAGAAACTGAATGATGTGATGCATTTTTGTAATGCACTTTTTAAAGACATACTGTAGGAGAAGTCGCAAAGCTCAAATCAGGTGATTAACAAGCATTGATTTACAGCAAACACGTGCacattgtacagtgtgtgtttcaaaTCCGTCATGTGCGTGTTGATTTCATCATCCTCTGTGCTTTTTCCGGAGGGAAGGGCTACGTGTCAGGGGGGGTGTTGCGAATTGAAATCTGATCCAAGAGCTAAGAACATTCCATCACTGGTGCTGGCCAGGAATCAGTCAGGAGCACGGTGGTGTGAATTACCGTCCTAGTAACCTGCAGCCAGGACAGATCTGACCAGCGTGTGTTACACAGGTAGCTGTCAGCCCGGTGGCGGGCATCTGTTGTTGCTCGAGTTTCTCTGTTGCTCACAGTGGCACCCAAGGGGAGTCTTTATTAAGAGCATTTTCTCTGGGTAGAACCTTAACAGATTGCTTATTGATTGGCCGTGGAGCCGAAccattaaaaaagaagaagaaaaaaatccacttttGTCAGTTGGCTGTGCAACATTTTATCTTTTGCAACGCTGCAGCATCCAGTTTCTGATACATTTCCTCAAATCCTGTTGCTATACAAGTGTAGCACTGGTGTTTTCATATATGACGGTTTTGTAGTTAATCATATCCTAATCATATCATTTGGTTACATATAGGTTTCAGAGGTTTGCGATAAATACAGCGTATCCGAAAAGTGGAGCCAGTGGAAATACGTTAAGCAGATTGGTCGATCTGAATGTGTtgagcaaaatctgcaaaaacacGATACAGTGCAAGGCGAACATGTAGAGCActtgttgtaaataataaacacaaaatgaaatttatgtagttttactctcactggttcctgacttttcgaACACCTTGCAAATTTCTTTCTCCCCTGTATAtgggtcatttgccaattcccacccactagctagctctctcACACaacacacgacagctaccagcCGGGGAGGATGAAGACTAAcgcgtgcttcctctgagacatgtgaagccagctcGCGTCTTTTTGAACTGCTTCTCATGCTGCATCATAGCGCAACTGAAACCttggaggaaagagctatcctccctcttccgcatacataaGCTCCCAGATGCTcgtgattggttagtgtcgctgtgattgacaggggagagagtaatgccaccCCTCCCACCTAGATAACACTGCCAATTTGAGATTGCAGAACCGGGAAAATATATTGTCGCGCTACCAAgcggcacaacagaaaagtgtttgccttATTACGAGCAAAAAACTGGTCCAAGTAGCCCTTGCTGCAGAACCAgtagtccagggggtggagtcagacctgatccaaTGCCTcctttaaccctaaccccagcCCATGAGACATACTTATCcaacctgaaacacactgagttGTCTCCACTCCCTTGGACTTTTGGTTTGAATCTgcccaggtaggaggagctggatcgggtctgactccacccccttcACTAGGTTCTGCAGCAAGGGCTACTCGACcagatttggatttttttcccctctcttttcAGTTGAGTCACTTGGCAGGCcgaaattatattttttttaactaaatgaTTAGAGTTACTTCGAAAACACTATTATCTATCAGCTTAAAGGCTATAACACCATGCTTTCCCTCAATATTGTAATTagaattttgtttaaatatatttcgTTATTTACTAAGCATCATCACTGCACAATCTTAAGCATTTGTAATTAAGTTGGTCTTGCTCTAAGGTTTTCATACATCATATAGTAGAATCAGCTTTGGGCACATTTCcttacttttattacttttcatCACCGTTATTGAATGTACTTTCTAACACAAATTCCAGTTAGAGCACCAGCAGGCGCAGCACTCCAATTTATAGTTCATTAACGACAGCGTAATTGGGCCTAAATGATAATGTGCTACAACGGGGCTGCCCAAAGGGCCACGCTTTTTCACGACTTCTTGAACACACCTAATAAAAGTCATGAAGGACTGGATAATAAGCTGATGAGGTAAATAAAGGGGTATTATAACAGAGAGAACTTTGCGCAGTCCAAACTGTTGTATGTCCTGTTGTATTAAAAGTTcgttttgtttttacacaaattgaaaaatatcacatgtacacatttaataCCTCTGAGAGCTAGCACAAGAACTAAACATTGCTAATGCTGCTTACTGAAGGTAATAGTCATAAAAGGAGTCTCTAAAGTGTCTTTCAACTTCTCTCACAGTAAATGGGGAAGAGGGTCACAAATGCATCACGGCTAGCAAACGCTGCTACAGtcctatataataataaattcttccAAAAGAAGAAATCCCATtcccagtgtttttttttaac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU219105 True 4370 lncRNA 0.39 2 20357176 20361573

Neighbor

gene id symbol gene type direction distance location
si:ch73-60h1.1 LOC108270791,LOC108437280,LOC107602811,LOC103036728,LOC107723863,LOC107674560,LOC107593134,LOC107753807,LOC107656080 coding downstream 147809 20193954 ~ 20209367 (-)
thop1 thop1,LOC107658499,LOC107592556,LOC107568058 coding downstream 209604 20135729 ~ 20147572 (-)
nwd1 nwd1 coding downstream 223786 20120538 ~ 20133390 (-)
reep6 reep6 coding downstream 245141 20106392 ~ 20112035 (-)
c11h19orf25 c10h19orf25 coding downstream 251471 20103334 ~ 20105705 (-)
fam174c fam174a,LOC107753890 coding upstream 60325 20421898 ~ 20428928 (-)
ptbp1b ptbp1,ptbp1b,LOC107753809,LOC107723850,LOC107602808,LOC107674525 coding upstream 72869 20434442 ~ 20446282 (-)
LOC113527106 LOC108270803 coding upstream 92282 20453855 ~ 20456781 (-)
misp misp coding upstream 96686 20458259 ~ 20468852 (-)
palm1a palm,palm1a coding upstream 109207 20470780 ~ 20502260 (-)
G185139 NA non-coding downstream 39904 20303541 ~ 20317272 (-)
G185138 NA non-coding downstream 72914 20283695 ~ 20284262 (-)
G184929 NA non-coding downstream 383714 19973260 ~ 19973462 (-)
LOC113542828 NA non-coding downstream 461002 19894042 ~ 19896174 (-)
G184859 NA non-coding downstream 493131 19863802 ~ 19864045 (-)
G185151 NA non-coding upstream 68702 20430275 ~ 20430499 (-)
G185304 NA non-coding upstream 297519 20659092 ~ 20659657 (-)
G185596 LOC108270818 non-coding upstream 585362 20946935 ~ 20967320 (-)
G185624 NA non-coding upstream 714756 21076329 ~ 21339757 (-)
G185633 NA non-coding upstream 733448 21095021 ~ 21173783 (-)
elavl1b LOC108270814,LOC108437281,LOC103034406,LOC105889513 other downstream 165033 20183042 ~ 20192143 (-)
dda1 dda1,LOC107685208,LOC105913185,LOC105939318 other downstream 644579 19706082 ~ 19712597 (-)
G184716 rps15,LOC107685215,LOC107578086 other downstream 659467 19695262 ~ 19697709 (-)
trnav-uac_6 NA other downstream 1040802 19316119 ~ 19316374 (-)
traf5 LOC108271110,LOC108411952 other downstream 3004807 17342815 ~ 17352369 (-)
mob3c mob3c,LOC108270829,LOC103027889,LOC108438648,LOC106613547,LOC106574029,LOC107572948 other upstream 561722 20923295 ~ 20929955 (-)
G185706 LOC108270801 other upstream 928876 21290449 ~ 21324977 (-)
G185718 NA other upstream 987436 21349009 ~ 21349850 (-)
cntnap5l LOC108270728,LOC108439930 other upstream 1437573 21799146 ~ 21895406 (-)
LOC117598437 LOC108191637,LOC107104758 other upstream 1633575 21995148 ~ 21996155 (-)

Expression


Co-expression Network