G258275 (LOC108276173)


Basic Information

Item Value
gene id G258275
gene name LOC108276173
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 20682370 ~ 20756538 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU305794
tatacaatatgtatatttatcaGGACTTAGCCGTAATTTGGTCTACTTTACACTCCACATTCTGATAGAAGAGTAGAAACATCCACAATTGCACAAGTCTGATTTATTCTAAATGAACACGTGACCAGCGTAAAATCACTGATTCACGATCTTCTAGTTAGAGCAAACGTCCACTAATAAGAAGCTTGTGAAAAGCAGGCTTAGCTCTGTGACTCGGAGTCAAACACACATTGTACTAGGCACAAGTTTATGAGCATACACATCGATGTTAACCGTTCTTTTTAAGTGCTATCTACATCACTGACTGCACACCACCACTTACATAACACCAGCCTTCAATACATCATCCgaccttctctctttcttatttaatcattttgctGATGCAGCCTAAAAACATTTGACTATGTAGCGCCTAGGACTCTACATAAACAACATGCAACTGTCAGCACAATATCCAtgaacacgaacacacacacacacacacacacacacacacacacacacactttgagatTGGCATTGAAAAGCAACATAAcgaaaatatattaaaacataagTGCTAATATAGTCAAAGGCAcctgtaaataaacagtaaaaaatgaTTAATACATGAAGGCagtaaaaacaaagagaaaaaagaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaccatatttGGACGGGATTAGGTTACATTTACAGGCGCTCCTCTGTGATTTCATTTCCATCTGGATCAGCCATGATGGCATAATAACCtactcttttattattattattatttcactttttttgcatcattGCTACTCTCTGTTTTAGTCATCTAGTGTGTTCCCAAATTAACAAATCAgaaaagcatgatgctgctgaTTCACATCTTGCAGAATATCATGGAACACTTAATCatctaggaaaataatgaatgagcAGTTGTATCTTTAATCATCGAACGTTAGACgctgacaaataaataaataaatataattgtaaACAATCCAATAGCGTTCCCAATATTAAAAGCactaaattatataaaacaacagaaactcTCTTTTCCTGTATTAATATAATTGATGTCTGGACACAAGAGCTTTATTTTAGAGGAGAAAagtaaaatgttattatagAAGCCACCCAGAGAAACTAATCCTGTCCAAATAGGGGTAAAGTTAATGATAATATCTTACAGTTGTTCAATAAGAGCATGATGAAAATTAAAGTGAGAATGTTTTGAACACCACTAATAGTGctaaagaacatttttataCAGTCACACCTTCCATTAAATCTTGAGAACAAAATGTAAACCGATGTCAACTACACATTAGATCAGACAATCTGACTTAACTCAATGGTTTAACTTAAGccgcattaaaataaacattactacataaaaacaaaactagtattaaaataatgattaagAAAACCTACAATAATTAAGTTCCACAATCAGGTTGCTCTGCTATGTGATGATGTGTCTCACAGGTAAGGGTACTGGTTGAGTTTCCTCTGGCTGAGGGGGTACGGCTGCCCGgggagctgctgctgttggcaGTGCGAGGCAGCTGATTGGCCCATCAGCCCCATAGCGCTGCTCTTCTGCAGCAGACTCAGAGAGGTGGAGTAAGGTCCGGCAGCACGCGTGTGCCtgatggaggaggaagaggaggaggaagagccGGCGGAGTTGTGCAGCTGATCCACAGCCTGCGACACTGAGGCCAGGGCGGCCGAGGCGGGGTAGGCGTACAggttgggggcggagctaaagAGCGAGGCCTCGTGCAGCCTGTAGGAGTGTGACGGA
>TU305795
caaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaccatatttGGACGGGATTAGGTTACATTTACAGGCGCTCCTCTGTGATTTCATTTCCATCTGGATCAGCCATGATGGCATAATAACCtactcttttattattattattatttcactttttttgcatcattGCTACTCTCTGTTTTAGTCATCTAGTGTGTTCCCAAATTAACAAATCAgaaaagcatgatgctgctgaTTCACATCTTGCAGAATATCATGGAACACTTAATCatctaggaaaataatgaatgagcAGTTGTATCTTTAATCATCGAACGTTAGACgctgacaaataaataaataaatataattgtaaACAATCCAATAGCGTTCCCAATATTAAAAGCactaaattatataaaacaacagaaactcTCTTTTCCTGTATTAATATAATTGATGTCTGGACACAAGAGCTTTATTTTAGAGGAGAAAagtaaaatgttattatagAAGCCACCCAGAGAAACTAATCCTGTCCAAATAGGGGTAAAGTTAATGATAATATCTTACAGTTGTTCAATAAGAGCATGATGAAAATTAAAGTGAGAATGTTTTGAACACCACTAATAGTGctaaagaacatttttataCAGTCACACCTTCCATTAAATCTTGAGAACAAAATGTAAACCGATGTCAACTACACATTAGATCAGACAATCTGACTTAACTCAATGGTTTAACTTAAGccgcattaaaataaacattactacataaaaacaaaactagtattaaaataatgattaagAAAACCTACAATAATTAAGTTCCACAATCAGGTTGCTCTGCTATGTGATGATGTGTCTCACAGGTAAGGGTACTGGTTGAGTTTCCTCTGGCTGAGGGGGTACGGCTGCCCGgggagctgctgctgttggcaGTGCGAGGCAGCTGATTGGCCCATCAGCCCCATAGCGCTGCTCTTCTGCAGCAGACTCAGAGAGGTGGAGTAAGGTCCGGCAGCACGCGTGTGCCtgatggaggaggaagaggaggaggaagagccGGCGGAGTTGTGCAGCTGATCCACAGCCTGCGACACTGAGGCCAGGGCGGCCGAGGCGGGGTAGGCGTACAggttgggggcggagctaaagAGCGAGGCCTCGTGCAGCCTGTAGGAGTGTGACGGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU305794 True 1811 lncRNA 0.39 2 20754692 20756538
TU305795 False 1193 lncRNA 0.39 2 20682370 20756538

Neighbor

gene id symbol gene type direction distance location
pip4k2ca pip4k2c,pip4k2ca,LOC107598997,LOC107714989,LOC107664235,LOC107697923,LOC107593957 coding upstream 2300 20668113 ~ 20680070 (+)
igfbp6b igfbp6,igfbp6b,LOC108433391,LOC107697925,LOC107599019 coding upstream 16313 20661406 ~ 20666057 (+)
lima1a LOC108275931 coding upstream 71657 20586167 ~ 20610713 (+)
copz1 copz1,LOC107664248 coding upstream 137573 20537706 ~ 20544797 (+)
hoxc1a NA coding upstream 235388 20439254 ~ 20446982 (+)
LOC113530777 LOC108276216 coding downstream 127154 20883692 ~ 20886509 (+)
cptp cptp,LOC108433359,LOC107697856,LOC107599683,LOC107706969,LOC107664144,LOC107594044 coding downstream 143584 20900122 ~ 20902771 (+)
vwa5b1 vwa5b1,LOC107599492 coding downstream 162550 20919088 ~ 20953971 (+)
fam43b fam43b coding downstream 241131 20997669 ~ 20999732 (+)
LOC113530567 LOC108275599 coding downstream 296132 21052670 ~ 21056506 (+)
G258273 NA non-coding upstream 1432 20663682 ~ 20680938 (+)
G258162 NA non-coding upstream 25303 20611541 ~ 20657067 (+)
G258156 csad,LOC107599458,LOC107706996,LOC107697858 non-coding upstream 105581 20567790 ~ 20576789 (+)
G258097 hoxc9,hoxc8,LOC107714926,LOC107664222,LOC103032829,LOC107593970 non-coding upstream 295557 20369995 ~ 20386813 (+)
G257803 kansl2,LOC107716132,LOC107591080 non-coding upstream 573144 20108390 ~ 20109226 (+)
G258362 NA non-coding downstream 29704 20786242 ~ 20790145 (+)
LOC117599282 NA non-coding downstream 152278 20908816 ~ 20911082 (+)
G258439 NA non-coding downstream 219360 20975898 ~ 20976359 (+)
G258460 NA non-coding downstream 328844 21085382 ~ 21088222 (+)
G258476 selenoi,si:ch211-197l9.4,LOC107549067 non-coding downstream 336791 21093329 ~ 21093844 (+)
LOC113530729 hnrnpa1,LOC108275985,LOC108275986,LOC107707002,LOC107714994 other upstream 168175 20510244 ~ 20514195 (+)
G258096 hoxc6,hoxc6a,LOC107593966,LOC108433405,LOC107664205,LOC107714999,LOC103034651 other upstream 283656 20390809 ~ 20398714 (+)
si:ch73-206d17.1 LOC108275771 other upstream 977307 19625529 ~ 19705063 (+)
G257622 LOC108276210 other upstream 1203475 19478302 ~ 19478895 (+)
pkig NA other upstream 1459811 19198426 ~ 19222559 (+)
ubxn10 ubxn10,LOC108275535,LOC108433381,LOC107385551,LOC107699345 other downstream 146567 20903105 ~ 20907459 (+)
si:ch73-290k24.5 LOC108275473 other downstream 471782 21228320 ~ 21238999 (+)
LOC117599233 NA other downstream 781507 21538045 ~ 21542427 (+)
LOC113530514 LOC108275916 other downstream 1914860 22671398 ~ 22680542 (+)
LOC117599309 NA other downstream 2615206 23371744 ~ 23383653 (+)

Expression


Co-expression Network