G307154


Basic Information

Item Value
gene id G307154
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 13501466 ~ 13501831 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU363969
CAGAGAACAAGCAGTGGGTCAGGTGATGTGCAAATAGGGTATCAAAGGTCAAGGCAAAAATCCAGAAACAAGAGAGCATGCTAAGGtcaaacccaaaaacaacaaacacgaATAGGAGGCTTGGTACGTCAGGGAAATACACAGAGTTGAACAAATACATCACAAGGTGAAAGTGCCGTGAGTGTGTTTATACGTTTGTGCAGGCAACTGAGTCAtggtgtgtgcaatcagtaatcgGGTGACTGTGAACGTGACAATGAACATGGCATGTGGGTATTGTAGTCCAAGGTGTCCATGTTTGTAGGTGcattctgggaagtggagttcaGTGCCGATTCTGGTGTGGACAATTTTCATGAAGGCAAa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU363969 True 366 lncRNA 0.45 1 13501466 13501831

Neighbor

gene id symbol gene type direction distance location
tsen2 tsen2 coding upstream 5481 13481411 ~ 13495985 (+)
pparg pparg,LOC107742034,LOC107667870,LOC107571218 coding upstream 24877 13440659 ~ 13476589 (+)
syn2b syn2,LOC107758022 coding upstream 75984 13358924 ~ 13425482 (+)
atg7 atg7,LOC107697561,LOC107750032 coding upstream 222365 13167155 ~ 13279101 (+)
hrh1 hrh1 coding upstream 339774 13140570 ~ 13161692 (+)
mkrn2 mkrn2 coding downstream 6578 13508409 ~ 13521412 (+)
cnbpb cnbp,cnbpb,LOC108254964,LOC108431552,LOC106566283,LOC105905103,LOC107742027 coding downstream 63238 13565069 ~ 13568961 (+)
LOC113537916 LOC108254963 coding downstream 67258 13569089 ~ 13578359 (+)
isy1 isy1,LOC108254962,LOC108431508,LOC107700632 coding downstream 77529 13579360 ~ 13586971 (+)
zgc:77375 LOC108254961,LOC108431553,LOC107700631,LOC107758152 coding downstream 87202 13589033 ~ 13606451 (+)
G307079 NA non-coding upstream 150786 13350453 ~ 13350680 (+)
G306959 NA non-coding upstream 167221 13331687 ~ 13334245 (+)
G306961 NA non-coding upstream 168218 13332806 ~ 13333248 (+)
G306937 NA non-coding upstream 208027 13288789 ~ 13293439 (+)
G306938 vgll4,vgll4b,LOC107750033,LOC107697562 non-coding upstream 218459 13196475 ~ 13283007 (+)
G307161 NA non-coding downstream 20178 13522009 ~ 13524054 (+)
LOC117599900 NA non-coding downstream 438595 13940426 ~ 13960190 (+)
G307272 NA non-coding downstream 501777 14003608 ~ 14003831 (+)
G307262 pdhb,LOC107721006 non-coding downstream 513331 14015162 ~ 14016394 (+)
G307293 rpp14,LOC103374991 non-coding downstream 550004 14051835 ~ 14058202 (+)
G306480 tuba1c,LOC103148207,LOC106920718,LOC102311436,LOC101065103 other upstream 1038930 12457601 ~ 12462536 (+)
G306103 NA other upstream 1985653 11515059 ~ 11515813 (+)
G305955 iqsec1 other upstream 2020366 11480669 ~ 11481100 (+)
G305869 NA other upstream 2175106 11325604 ~ 11326360 (+)
G305863 iqsec1,iqsec1b other upstream 2186030 11314184 ~ 11315436 (+)
ippk ippk,LOC107755999,LOC106566243 other downstream 172523 13674354 ~ 13692912 (+)
asic1b asic1,asic1b,LOC107721241,LOC107569540 other downstream 677952 14179783 ~ 14476817 (+)
gpd1b gpd1,gpd1b,LOC107698578,LOC107727040,LOC107721242,LOC107694423 other downstream 1012761 14514592 ~ 14524976 (+)
dag1 dag1,LOC107757307,LOC107592827,LOC108415278,LOC108415277 other downstream 2255059 15756890 ~ 15799890 (+)
amigo3 amigo3 other downstream 2987530 16489361 ~ 16501684 (+)

Expression


Co-expression Network