G306938 (vgll4,vgll4b,LOC107750033,LOC107697562)


Basic Information

Item Value
gene id G306938
gene name vgll4,vgll4b,LOC107750033,LOC107697562
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 13196475 ~ 13283007 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU363733
GGAAAGGCGTGTGCATCCAGGGCCCCACCCCCAGTACCCCAGGGAGGCCCATCCCACCGCAACTCACCAGAGATACAAGCCTAGGCCAAAGATTTGCTTAATGAGGCTCAACTCAATCAATCAActagcatatttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacaataagaaacgTGTTAGATTATGTACACGGCTATATGCTAGCGCTGCCGGAAGCGGAGCTGAATCATGCACAGTCGCTTTGAGAGTGAAGCGGTGTGGAAGGAGAGCGGGATGCACAGCTGGTCCTCTGTTTCAGGAAACTAGGGATGGAGAGTGATTGATGTTGACCATGTGAGTGTTAGGTGAGGAGTCGGGGCTTCCGGTGGAGCCTCCCTTAGCTTTGATTTGGAGCCAGGTCTCTCCCAGAGCCTTGGTGAAGTGATCATCCACCGATCCGGTGATAGACACAGAGTTGGTGACCGGTTCGGGCTCTCTGTAGTTTTTCCCCAGACTGCGACGGAAATGCTCCTCAATCACAGGGTCACATGCTGCGTTTgctaaaacaggaaaaaaaaattggagatTATTACACTGATGTGGAATCGTGTCAGTTAATTATAATTGGACTGAGTCTATCAGTTTCATCATACATCTTAATATTACAGACACTCATACGCCAATATATATGGATTGTataaactatttaaatttaaaatgagacAGTAGGAGTTTATTTCTTCCTGAAGTACTAAAA

Function

symbol description
vgll4b Predicted to enable transcription coactivator binding activity. Acts upstream of or within hippo signaling. Is expressed in several structures, including digestive system; epidermis; forerunner cell group; nervous system; and swim bladder. Orthologous to human VGLL4 (vestigial like family member 4).
vgll4 Predicted to enable transcription coactivator binding activity. Involved in negative regulation of Wnt signaling pathway; negative regulation of cell growth; and negative regulation of hippo signaling. Predicted to be located in nucleus.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU363733 True 742 lncRNA 0.44 2 13196475 13283007

Neighbor

gene id symbol gene type direction distance location
hrh1 hrh1 coding upstream 34783 13140570 ~ 13161692 (+)
slc6a1b slc6a1,slc6a1b,LOC107670967,LOC107746710,LOC107697564,LOC107750027 coding upstream 122717 13059983 ~ 13073758 (+)
slc6a11b slc6a11,LOC107750026,LOC107697565,LOC107561801 coding upstream 185416 12975527 ~ 13011059 (+)
atp2b2 atp2b2,LOC107570616,LOC107561799,LOC102776443,LOC106566233,LOC107746712 coding upstream 237369 12789492 ~ 12959106 (+)
iars1 iars coding upstream 421331 12694286 ~ 12775144 (+)
syn2b syn2,LOC107758022 coding downstream 75917 13358924 ~ 13425482 (+)
pparg pparg,LOC107742034,LOC107667870,LOC107571218 coding downstream 157652 13440659 ~ 13476589 (+)
tsen2 tsen2 coding downstream 198404 13481411 ~ 13495985 (+)
mkrn2 mkrn2 coding downstream 225402 13508409 ~ 13521412 (+)
cnbpb cnbp,cnbpb,LOC108254964,LOC108431552,LOC106566283,LOC105905103,LOC107742027 coding downstream 282062 13565069 ~ 13568961 (+)
G306756 NA non-coding upstream 291634 12904208 ~ 12904841 (+)
G306744 NA non-coding upstream 398493 12797748 ~ 12797982 (+)
G306503 NA non-coding upstream 622716 12572422 ~ 12573759 (+)
G306479 NA non-coding upstream 748101 12437199 ~ 12448374 (+)
G306470 NA non-coding upstream 900746 12295369 ~ 12295729 (+)
G306937 NA non-coding downstream 5782 13288789 ~ 13293439 (+)
G306959 NA non-coding downstream 48680 13331687 ~ 13334245 (+)
G306961 NA non-coding downstream 49799 13332806 ~ 13333248 (+)
G307079 NA non-coding downstream 67446 13350453 ~ 13350680 (+)
G307154 NA non-coding downstream 218459 13501466 ~ 13501831 (+)
G306480 tuba1c,LOC103148207,LOC106920718,LOC102311436,LOC101065103 other upstream 733939 12457601 ~ 12462536 (+)
G306103 NA other upstream 1680662 11515059 ~ 11515813 (+)
G305955 iqsec1 other upstream 1715375 11480669 ~ 11481100 (+)
G305869 NA other upstream 1870115 11325604 ~ 11326360 (+)
G305863 iqsec1,iqsec1b other upstream 1881039 11314184 ~ 11315436 (+)
ippk ippk,LOC107755999,LOC106566243 other downstream 391347 13674354 ~ 13692912 (+)
asic1b asic1,asic1b,LOC107721241,LOC107569540 other downstream 896776 14179783 ~ 14476817 (+)
gpd1b gpd1,gpd1b,LOC107698578,LOC107727040,LOC107721242,LOC107694423 other downstream 1231585 14514592 ~ 14524976 (+)
dag1 dag1,LOC107757307,LOC107592827,LOC108415278,LOC108415277 other downstream 2473883 15756890 ~ 15799890 (+)
amigo3 amigo3 other downstream 3206354 16489361 ~ 16501684 (+)

Expression


Co-expression Network