Gene
RNA
| Item | Value |
|---|---|
| gene id | atp2b2 |
| gene name | atp2b2,LOC107570616,LOC107561799,LOC102776443,LOC106566233,LOC107746712 |
| gene type | coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047614.1 |
| NCBI id | CM018560.1 |
| chromosome length | 21552800 |
| location | 12789492 ~ 12959106 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| symbol | description |
|---|---|
| atp2b2 | Predicted to enable P-type calcium transporter activity and PDZ domain binding activity. Predicted to be involved in regulation of cytosolic calcium ion concentration. Predicted to act upstream of or within neuron differentiation. Predicted to be located in cytoplasm. Predicted to be active in intracellular membrane-bounded organelle and postsynaptic density membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including blood; eye; heart; liver; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 12. Orthologous to human ATP2B2 (ATPase plasma membrane Ca2+ transporting 2). |
| description |
|---|
| PREDICTED: plasma membrane calcium-transporting ATPase 2 isoform X1 |
| id | name | namespace |
|---|---|---|
| GO:0030182 | neuron differentiation | biological_process |
| GO:0070588 | calcium ion transmembrane transport | biological_process |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0005388 | calcium transmembrane transporter activity, phosphorylative mechanism | molecular_function |
| GO:0005524 | ATP binding | molecular_function |
| GO:0046872 | metal ion binding | molecular_function |
| id | description |
|---|---|
| K05850 | ATP2B; P-type Ca2+ transporter type 2B |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_026932426.2 | False | 6866 | mRNA | 0.44 | 24 | 12789493 | 12959106 |
| XM_026932428.2 | True | 7062 | mRNA | 0.44 | 25 | 12789493 | 12959106 |
| XM_026932429.2 | False | 6649 | mRNA | 0.44 | 23 | 12848117 | 12959106 |
| XM_026932430.2 | False | 6833 | mRNA | 0.44 | 23 | 12789493 | 12959106 |
| XM_026932431.2 | False | 4386 | mRNA | 0.50 | 26 | 12789492 | 12956404 |
| XM_026932432.2 | False | 4357 | mRNA | 0.50 | 26 | 12789492 | 12956372 |
| XM_026932433.2 | False | 6698 | mRNA | 0.44 | 21 | 12789493 | 12959106 |
| XM_026932434.2 | False | 4342 | mRNA | 0.50 | 26 | 12789492 | 12956445 |
| XM_026932435.2 | False | 4326 | mRNA | 0.50 | 26 | 12789492 | 12956426 |
| XM_026932436.2 | False | 4217 | mRNA | 0.50 | 23 | 12789493 | 12956404 |
| XM_026932437.2 | False | 6953 | mRNA | 0.44 | 25 | 12789493 | 12959106 |
| XM_034314114.1 | False | 6740 | mRNA | 0.44 | 22 | 12789493 | 12959106 |
| XM_034314115.1 | False | 4259 | mRNA | 0.50 | 24 | 12789493 | 12956404 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| iars1 | iars | coding | upstream | 14348 | 12694286 ~ 12775144 (+) |
| sarnp | sarnp | coding | upstream | 162884 | 12608353 ~ 12626608 (+) |
| cdk2 | cdk2,LOC107570445,LOC107683630 | coding | upstream | 183439 | 12599069 ~ 12606053 (+) |
| pmela | pmel | coding | upstream | 193695 | 12585125 ~ 12595797 (+) |
| LOC113538096 | LOC108255238,LOC108431540,LOC105912282,LOC106565442 | coding | upstream | 226751 | 12533236 ~ 12562741 (+) |
| slc6a11b | slc6a11,LOC107750026,LOC107697565,LOC107561801 | coding | downstream | 16421 | 12975527 ~ 13011059 (+) |
| slc6a1b | slc6a1,slc6a1b,LOC107670967,LOC107746710,LOC107697564,LOC107750027 | coding | downstream | 100877 | 13059983 ~ 13073758 (+) |
| hrh1 | hrh1 | coding | downstream | 181464 | 13140570 ~ 13161692 (+) |
| atg7 | atg7,LOC107697561,LOC107750032 | coding | downstream | 208049 | 13167155 ~ 13279101 (+) |
| syn2b | syn2,LOC107758022 | coding | downstream | 399818 | 13358924 ~ 13425482 (+) |
| G306503 | NA | non-coding | upstream | 215733 | 12572422 ~ 12573759 (+) |
| G306479 | NA | non-coding | upstream | 341118 | 12437199 ~ 12448374 (+) |
| G306470 | NA | non-coding | upstream | 493763 | 12295369 ~ 12295729 (+) |
| G306452 | NA | non-coding | upstream | 499735 | 12284951 ~ 12289757 (+) |
| G306433 | NA | non-coding | upstream | 634942 | 12154295 ~ 12154550 (+) |
| G306938 | vgll4,vgll4b,LOC107750033,LOC107697562 | non-coding | downstream | 237369 | 13196475 ~ 13283007 (+) |
| G306937 | NA | non-coding | downstream | 329683 | 13288789 ~ 13293439 (+) |
| G306959 | NA | non-coding | downstream | 372581 | 13331687 ~ 13334245 (+) |
| G306961 | NA | non-coding | downstream | 373700 | 13332806 ~ 13333248 (+) |
| G307079 | NA | non-coding | downstream | 391347 | 13350453 ~ 13350680 (+) |
| G306480 | tuba1c,LOC103148207,LOC106920718,LOC102311436,LOC101065103 | other | upstream | 326956 | 12457601 ~ 12462536 (+) |
| G306103 | NA | other | upstream | 1273679 | 11515059 ~ 11515813 (+) |
| G305955 | iqsec1 | other | upstream | 1308392 | 11480669 ~ 11481100 (+) |
| G305869 | NA | other | upstream | 1463132 | 11325604 ~ 11326360 (+) |
| G305863 | iqsec1,iqsec1b | other | upstream | 1474056 | 11314184 ~ 11315436 (+) |
| ippk | ippk,LOC107755999,LOC106566243 | other | downstream | 715248 | 13674354 ~ 13692912 (+) |
| asic1b | asic1,asic1b,LOC107721241,LOC107569540 | other | downstream | 1220677 | 14179783 ~ 14476817 (+) |
| gpd1b | gpd1,gpd1b,LOC107698578,LOC107727040,LOC107721242,LOC107694423 | other | downstream | 1555486 | 14514592 ~ 14524976 (+) |
| dag1 | dag1,LOC107757307,LOC107592827,LOC108415278,LOC108415277 | other | downstream | 2797784 | 15756890 ~ 15799890 (+) |
| amigo3 | amigo3 | other | downstream | 3530255 | 16489361 ~ 16501684 (+) |
