pmela (pmel)


Basic Information

Item Value
gene id pmela
gene name pmel
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 12585125 ~ 12595797 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932786.2
GCTCAGACTCATTTAAAAAAGGTTTGGCACTCCTCAAAGTTCTTGACTTGGGCTGTGTTTCAGGAATTGTTAAGGATTGAACCTGCTGGGTGGGGGAAGAAGTGGAGAATGAGAACAGCTCTTATAGTTCTGGGTTTGACCCTCTCTTTGGCTGCTATTGCAAGGGCCAGAACCCATTTTAGCCGCTATCGCTCATGGAATTCGCGAATGTACCCAGTGTGGAGAGATGGTGATCCCAGATACAGGGACTGCTGGAAAGGTGGACAGGTAACATTTGACATCAAGAATGATGCCCCAACCCTGACAGGAGCCAAAACAACATTCAGTATTAATGTTCTTCCTCCCGGGAATCAGACGGTGCTGCCTAATGGGACAGTGGTGTGGAGCCAAAACTGCACTGTTAATGGAACCCATCACATGAAGGGTGAACATGTTTACCCAGAATTCAACACTTCCCAAGAATGGACAGGGGTTTTTCCTGATGGTACACCATTCACTACAAGATATTCCAAGAAACCTCGCTTCATCTTTGTGTGGAAGACTTGGGGTCGATATTGGCAGATGGCTGGTGGTCCTTCCTCTGCACTCACTATTGGAACAGACAATGTGCCATTGGGCTCTTACAACATGGAGGTGGTTATTTATCATTGCCGGGGAAAGGACAGGTTCATTCCTCTTGGATACATGTCTACACAGTTTTCTATCACagATCAGATTCCATTCATAGTGACTATGTCCCAGACTGGTGATGTTAACCAGGCAGATCAGAGCTTTATCCAGAGTCGACCTGTAACCTTCAACGTTGGTGTCCATGACCCCAGCCAATACCTCAGTGGATCTGACATCACCTTTACCTGGGACTTTGGGGACAACAGCGGAACGCTTATCTCCCATCAACCCtctgttacacacacttacGTCTCAACCGGCTCATTTAGGCCACAGCTTGTGCTGATGGCTGCCATCCCAaatggctgtgtcccaaatccaACTGCTGGTGGGGTCGTAACTGCAGCCCAAACAGTGACAGTGGCATCAGAAGCTCCAGCTGCACAAACCACCAATATGGCTGCCTCTCTTCAGCCTGTACTCGAGCAAGAAAGCATAGCTTCTGCTGTTCCAGCAGCAGCTAACGACTTAGCTGCAGCTGCAGCTGATGATCAAGAGGCAGTAATAGCTGCTGAAAATCCAGTTTCCGATGTTCCAGCCACTGGTGAAACAGTTACAGATGGTATTGTAGAGACAGAGGCCCTTACAGTTACTGATGTTGCTGCATCTATCACCCCTATTGAGGAGAATGTAGTCGAGTCAGCTGTCTCCGAAGCTGCAGTTTTGGAAGCTGCAGCAGCTGCCaatggagagacagatacaTTAGCACCTGTTGCagatgttattattaatattgtggCCACAGATGCTACGGTTGTTCAAACAGTGCCATCTATAGTACCAGTGAATGAGGGTGAGATTGTGGAAACTGTAAATGAAGCTACTCCAAATGAAGTCGTAGCTGAAGCTGCTGTAAATACTGCCCCTGCTACAGTTGCTGTTATTCCTACCACATCTCCAGTGACACAGATTGAGATTGTTGCCGAAGCAACAGAGGAAACACAAGCTGCTCTGGTTATTGCAAAACGACAAGCTCCAGAAATTCCAGCGGAGGGAAACTGCATGATTTACCGCTACGGCTCTTTCTCCTCAACCTTGGATGTTGTTCAGGGAATTGAGAGTGTGGAGATTGTGGAGGTGAGTAATGTTGCAGTTTTGGCCACCAACGTGGAGCAGAACGCCGTGGATCTCACCGTCACCTGCCAGGGAAGCTTGCCGAGTGAGGTGTGTACCATGGTGATGGACTCAGACTGCATCAGTCCTGTGCAGACCGAGTGTAACGCTGTGACTCCGACTGAGTGCCAGATGATCCTCCGCCGTTTCTTTAATGATTCTGGAACTTTCTGCATTAATGTGTCTCTGACTAATGATGTCAGTTTTGCTGTAACCAGTGCGAGGCTCAGTGTCACTGTGGATTCAGGCTCCTCCACGGCAGGCGCTGCCACTGCAGTACTCGGTGTTCTTGTGCTCGTCTGTGCTCTAGGCACCATTGCATTAACTTACAGgcGATTGAAGGCACACCATGCGTTCAAAGAGAACTCGACAGATGGCATCATGGGTATTTCTGGTTTTAAGTCTGTTCCAATGTTAGTGTGGAACTTTCTGACCCGACAGAGCACTGCGGAGAGCCGCCCTCTGCTGCAGGGGAGAGtggtgtgaacacacacacacaacactcacacacactgctcacatacactacacacaatccacacacacttatatttGTGCtgatgttacatttacataatcCAGCTAGTGGCTaatgtttattttggtttaaaatagTATTACAGTGTTATGACCAGATTAATGGGACAAGAATGCAACACCGGGTTTGTCCCAGGTGAAAAAGATGGCTGTCTTTATGCTGTCTTCTATATGAGCCTGACCTTATCTTCAGAGTGAAAACACTGCTAAAAAAGTTCTGCCTACTTCTGAACATAATGCAAGGGAATTTTGAAGCATACCCAATACTAATAACaacattgtgtgttttgaatATAGAAATGTTATAGCTTAACTGATTATCACTGCATgcctaatacacacacaacaccacacaccgTGTTAGGACTTCTCAAGGAAATGGATGAATAATTTGACTAAAGCTTTATGTACCATTATGCAGAACCACAACATGCTCGTAATACACACTCTTAATAGAGAGGTAGATTAGATGCATTTCTTTGAATGAATATATTGATATCGacttgaaatgaatgaaagaaaagagaatgcCCAGTATCTCGATCAGTGTTAATTAAAACTGGCCTTATTCAGTTTTGCTTTATGGTTTTGCTAAATAACTGCTACAGATCATTTATGAGTAACACAAATCCTAGCTGACAATGATGATGTAGTTCAGATCTGTTAAGTTTGAGGTGCTATGCTTTTCTCCATTACTGAACACTTGTTATCCTTcaataaagacatttttgtgCTTTA

Function

symbol description
pmel Enables identical protein binding activity. Involved in melanosome organization. Located in Golgi apparatus; cytoplasmic vesicle; and endoplasmic reticulum membrane.

NR:

description
PREDICTED: melanocyte protein PMEL-like isoform X2

GO:

id name namespace
GO:0048069 eye pigmentation biological_process
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932786.2 True 3057 mRNA 0.45 12 12585125 12595797

Neighbor

gene id symbol gene type direction distance location
LOC113538096 LOC108255238,LOC108431540,LOC105912282,LOC106565442 coding upstream 22384 12533236 ~ 12562741 (+)
timeless timeless,LOC107689440 coding upstream 57847 12496309 ~ 12527278 (+)
prph prph coding upstream 99150 12474056 ~ 12485975 (+)
suox suox coding upstream 130804 12434509 ~ 12454321 (+)
mcrs1 mcrs1,LOC107696040 coding upstream 158092 12417610 ~ 12427033 (+)
cdk2 cdk2,LOC107570445,LOC107683630 coding downstream 3272 12599069 ~ 12606053 (+)
sarnp sarnp coding downstream 12556 12608353 ~ 12626608 (+)
iars1 iars coding downstream 98489 12694286 ~ 12775144 (+)
atp2b2 atp2b2,LOC107570616,LOC107561799,LOC102776443,LOC106566233,LOC107746712 coding downstream 193695 12789492 ~ 12959106 (+)
slc6a11b slc6a11,LOC107750026,LOC107697565,LOC107561801 coding downstream 379730 12975527 ~ 13011059 (+)
G306503 NA non-coding upstream 11366 12572422 ~ 12573759 (+)
G306479 NA non-coding upstream 136751 12437199 ~ 12448374 (+)
G306470 NA non-coding upstream 289396 12295369 ~ 12295729 (+)
G306452 NA non-coding upstream 295368 12284951 ~ 12289757 (+)
G306433 NA non-coding upstream 430575 12154295 ~ 12154550 (+)
G306744 NA non-coding downstream 201951 12797748 ~ 12797982 (+)
G306756 NA non-coding downstream 308411 12904208 ~ 12904841 (+)
G306938 vgll4,vgll4b,LOC107750033,LOC107697562 non-coding downstream 600678 13196475 ~ 13283007 (+)
G306937 NA non-coding downstream 692992 13288789 ~ 13293439 (+)
G306959 NA non-coding downstream 735890 13331687 ~ 13334245 (+)
G306480 tuba1c,LOC103148207,LOC106920718,LOC102311436,LOC101065103 other upstream 122589 12457601 ~ 12462536 (+)
G306103 NA other upstream 1069312 11515059 ~ 11515813 (+)
G305955 iqsec1 other upstream 1104025 11480669 ~ 11481100 (+)
G305869 NA other upstream 1258765 11325604 ~ 11326360 (+)
G305863 iqsec1,iqsec1b other upstream 1269689 11314184 ~ 11315436 (+)
ippk ippk,LOC107755999,LOC106566243 other downstream 1078557 13674354 ~ 13692912 (+)
asic1b asic1,asic1b,LOC107721241,LOC107569540 other downstream 1583986 14179783 ~ 14476817 (+)
gpd1b gpd1,gpd1b,LOC107698578,LOC107727040,LOC107721242,LOC107694423 other downstream 1918795 14514592 ~ 14524976 (+)
dag1 dag1,LOC107757307,LOC107592827,LOC108415278,LOC108415277 other downstream 3161093 15756890 ~ 15799890 (+)
amigo3 amigo3 other downstream 3893564 16489361 ~ 16501684 (+)

Expression


Co-expression Network