iars1 (iars)


Basic Information

Item Value
gene id iars1
gene name iars
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 12694286 ~ 12775144 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932714.2
CGTTCTCTTCAGTTGCATCATTTCCGCATTGTgattccttcttcttcttcttcggcATCCCGGCTGAGACCGCCGCGTGCATCATGGTGGAACCCGTGCCTGAGTCGATCAACTTTCCCTCAGAAGAGGAGCACATTCTCCAATTCTGGACTGAAAAGGACTGCTTCCAGGAGTGCATGAAGCAATCCAAAAACAGGCCCAAGTACACTTTCTACGATGGACCACCCTTTGCTACTGGTCTCCCCCATTACGGCCACATTCTGGCTGGCACTATAAAGGATATCGTCACAAGGTTCGCTCACCAGAGTGGTTTCCACGTGGACAGGAGGTTTGGCTGGGATTGCCACGGCTTGCCTGTGgAATATGAGATCGATAAGACACTGGGAATTAAAGGACCAGAGGATGTTGCTAAGATGGGGATAGCAGAGTACAACAAGCAGTGCAGGAGTATCGTGATGAGATATGCCAAAGAGTGGGAGGTTTCAGTGAAGAGAATGGGCCGCTGGATCGACTTTAAGAATGATTACAAGACCCTCTACCCATGGTTCATGGAGACTGTATGgtGGGTGTTTAAGCAGCTCTATGATACAGGTCTGGTGTACAGAGGAGTGAAGGTCATGCCATTCTCCACCGCCTGTAACACACCACTCTCCAACTTCGAATCACACCAGAACTACAAGGACGTTCAGGATCCATCCGTCATTGTGAACTTCCCTTTGCTGGAGGacgagagtgtgtgtctgattgCCTGGACCACCACACCATGGACTCTGCCCAGTAATCTGGCACTGTGTGTGAACCCTGAGTTCATCTATgtcaaggtcaaagACAACGCCACTGATAAAGTGTACATCATGATGGAGGCCAGGCTTGGGGCGCTGTTCAAAACTGAGAGTGAATACACCATCCTGGAAAAGTTTCCTGGCAAGAATCTGAAGGGAAAACAATACAAACCTCTTTTTGAATACTTCATCAAGTGTAAAGAGAACGGAGCCTTTTCCGTCGTGCTGGATAACTACGTCCGTGAGGAGGAGGGTACAGGAGTGGTTCATCAGGCGCCCTACTTTGGAGCTGATGATTACCGCGTGTGTATGGAGTATAATATCATCCAGCGAGACTCGGCACCCATCTGCCCTGTGGATTCATCAGGCTGTTTCACCCCTGAGGTCACACACTTCTCCGGCCAGTATGTGAAGGATGCAGACAAAAACATCATTAAGTGGCTGAGAGAGAACGGACGGCTGGTCAACTCAGGCACTTTTAAACACAGCTACCCTTTCTGCTGGAGGTCTGACACACCGCTGATCTACAAAGCTGTGCCCAGCTGGTTTGTGAGAGTCGAGCACATGGTGGATAAACTTCTGGAAAACAACGGCAAATGCTACTGgGTTCCTGAGTTTGTGAGGGAGAAGCGTTTTGGTAACTGGCTAAGAGATGCTCGAGACTGGGCCATCTCCCGTAACCGATACTGGGGGACGCCAATTCCTCTGTGGGTCAGCGATGACTATGAGGAGgtggtgtgtgtgggcTCCATTgctgagctggagcagctgaCGGGAGTGAAGGTTGCAGATCTGCACAGAGAAACcaTAGACTGTTTAACTATCCCGTCCCGCTGTGGGAAAGGCGAGCTCAAGAGGGTCTCAGAGGTGTTCGACTGCTGGTTTGAGAGCGGCAGCATGCCCTACGCCCAAGTGCACTACCCTTTTGAGAACAGGCGCGAGTTCGAGGACACTTTTCCTGCAGACTTCATCGCAGAGGGCATCGACCAGACCAGAGGATGGTTCTACACATTGCTCGTGCTCTCAACTGCCCTCTTCGGTAAGCCTCCATTCAAGAACGTGATCGTCAATGGCCTTGTCCTGGCAAGCGATGGCCAGAAGATGAGCAAAAGGAAGAAGAACTACCCGGACCCAGGTGTGATCGTACAGAACTACGGCGCCGATGCACTTAGGCTGTACCTAATCAACTCTCCGGTGGTCCGAGCAGAAAACCTGCGCTTTAAAGAGGAAGGAGTGAGGGACGTGCTCAAAGACGTTTTCCTGCCCTGGTACAACGCTTACCGCTTCCTCGTGCAAAATGTCCTGAGGCTTCATAAGGAAGAGGACATTAAGTTCCTGTATAACGAGAACACGGCCAAGCTGAGCGACAACATCATGGACAAATGGATCCAGTCCTTCACTCAGTCGCTCATTCAGTTCTTTAAAGCTGAGATGGATGCCTACAGGTTGTACACCGTCGTGCCCAAGCTGGTGAAGTTTGTGGACATGCTGACTAATTGGTACGTGAGGATGAACCGCAGGCGTCTGAAGgGTGAGAGTGGAAGTGAAGACTGTGTCTGGGCTCTGGAGACACTCTTTACTGTGCTGTTCTCCATGTGCAGACTGATGGCTCCCTTTACGCCGTTCATCACTGAGCTGATGTACCAGAACCTGCGTCACCTGATCGACCCCGAATCCGTAGAGGAGAAAGACACAGCCAGTATTCACTACCTGATGCTCCCTCATGTCAGAGAGTCGCTGATTGACAAGCGCATCGAGAGTGCCGTATCCCAAATGCAGTCCGTCATCGAGCTGGGTCGAGTGATCCGAGACAGGAAAACTCTCCCTGTCAAGtaTCCCCTCAGGGAGGTGGTGGTCATCCATCAGGACCCCGAGGCTCTTGGAGACATTCAGTCCCTGCAGAAATACATTCTGGAGGAGCTGAATGTGCGCCAACTCACCCTCTCCACAGATAAAGATAAATACGGCATCCGGCTGCGGGCCGAGCCTGACCACATGGTGCTCGGGAAGAGGCTGAAAGGAGCGTTCAAATCTGTCACGGCTGCCATCAAGGAACTGAAGAGTGAACAGCTGGAGGCCTTCCAAAAAACGGGTTCTATCACACTGGAAGGACACGAGCTGCATGAGGAAGATTTGCGGCTGATGTACACCTTTGATCAGAAATCAGACACGGCCACGCAGTATGAAGCCCATTCAGATGGGCAGctCTTGGTGCTCTTAGACATCACTCCTGATCAGTCAATGGTGGATGAAGGCGTGGCTCGAGAAGTTATAAACCGCATTCAGAAACTGCGcaagaaggGTCATCTGGTCCCATCTGACGAGATCACTGTGTACTACAGCTCGGAGCCTGCAGGTGATTACCTAGACAAAGTGATCCAGGCTCATTCAGACTTCATCCTTGCCACCACGAAGGCTCCCCTAAAACCTTATCCCGTTCCCAAAAACGCCAGTGTGATCGTCCAAGAGAAGACTCAGTTGAAGGGTTCCGACCTGGATTTGACCATCATTAAGGGAGCAGAGGTCTCCAGAGCGCCCCTCACTGGACCTGCATGTGCTTACCTCAACCTCCGAGTCAATctcaacaataaacaacaagAGGGAATGATTCTGCTGGAAAATCCCAAGGGAGACAACAAGCTGGACCTAGAGAAGCTGAAGATGGTTTGCTGCAGCATTTTCAAACTCAACAACGCTCCTTTGGCCTTTTTCAATGAGACTAGTGaGCTGAAGAAGAGCAGTGATCTCATGGCTCTGAGTGGGAAAACTCTGTGTGTGACGTCAGGAGCTCGTcctgcagaaaaaaacagctccGACTCACTGCTGTGCCCTTACATCAACCTACAACTCATCAACGCATGTCCTGCAGAGTGCCAGAGGGGTGATGTTGGCACATTGCTGCTCACTAATCCTGTGGGTCAGAATAGCCTCCAGCCCACGGCGCTGATCACTGAAGCTGCTAAAGTTTTCGGGCTCAGAGGAAGGAAGATTAAACTCTATATGGACGAGGAGCTCAAAGAAGAATTCACCGAGACGTCTCTGAAGACCCTGAACACGAAGACTTTGTATGTACGAGTTCTTCCCACAACCGCAGAAGCATAGCCGtgttttaaagatatttaagtGTCTCATTTTGTTACCACCAATCAGATTATTCAGTAATTTCATCTACGTCTTATTCTGTCATACCTAAACTTCATATTCTGCATAACTCTGTTATAACAGGCTTTTGGTGTTAGAGCACTTAgtaaatgaaaaggaaaaagagtcTGAATGATGGCATTGTCTAATAAATGGATTCTGAACTAATAAAGATGGCATTTTCCCTCTGCATTTACAAAA

Function

symbol description
iars Enables isoleucine-tRNA ligase activity. Involved in isoleucyl-tRNA aminoacylation. Part of aminoacyl-tRNA synthetase multienzyme complex. Is expressed in several structures, including alimentary system; nervous system; respiratory system; sensory organ; and urinary system. Orthologous to human IARS1 (isoleucyl-tRNA synthetase 1).

NR:

description
isoleucine--tRNA ligase, cytoplasmic

GO:

id name namespace
GO:0006428 isoleucyl-tRNA aminoacylation biological_process
GO:0006450 regulation of translational fidelity biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004822 isoleucine-tRNA ligase activity molecular_function
GO:0002161 aminoacyl-tRNA editing activity molecular_function

KEGG:

id description
K01870 IARS, ileS; isoleucyl-tRNA synthetase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932714.2 True 4124 mRNA 0.50 34 12694286 12775144

Neighbor

gene id symbol gene type direction distance location
sarnp sarnp coding upstream 67678 12608353 ~ 12626608 (+)
cdk2 cdk2,LOC107570445,LOC107683630 coding upstream 88233 12599069 ~ 12606053 (+)
pmela pmel coding upstream 98489 12585125 ~ 12595797 (+)
LOC113538096 LOC108255238,LOC108431540,LOC105912282,LOC106565442 coding upstream 131545 12533236 ~ 12562741 (+)
timeless timeless,LOC107689440 coding upstream 167008 12496309 ~ 12527278 (+)
atp2b2 atp2b2,LOC107570616,LOC107561799,LOC102776443,LOC106566233,LOC107746712 coding downstream 14348 12789492 ~ 12959106 (+)
slc6a11b slc6a11,LOC107750026,LOC107697565,LOC107561801 coding downstream 200383 12975527 ~ 13011059 (+)
slc6a1b slc6a1,slc6a1b,LOC107670967,LOC107746710,LOC107697564,LOC107750027 coding downstream 284839 13059983 ~ 13073758 (+)
hrh1 hrh1 coding downstream 365426 13140570 ~ 13161692 (+)
atg7 atg7,LOC107697561,LOC107750032 coding downstream 392011 13167155 ~ 13279101 (+)
G306503 NA non-coding upstream 120527 12572422 ~ 12573759 (+)
G306479 NA non-coding upstream 245912 12437199 ~ 12448374 (+)
G306470 NA non-coding upstream 398557 12295369 ~ 12295729 (+)
G306452 NA non-coding upstream 404529 12284951 ~ 12289757 (+)
G306433 NA non-coding upstream 539736 12154295 ~ 12154550 (+)
G306744 NA non-coding downstream 22604 12797748 ~ 12797982 (+)
G306756 NA non-coding downstream 129064 12904208 ~ 12904841 (+)
G306938 vgll4,vgll4b,LOC107750033,LOC107697562 non-coding downstream 421331 13196475 ~ 13283007 (+)
G306937 NA non-coding downstream 513645 13288789 ~ 13293439 (+)
G306959 NA non-coding downstream 556543 13331687 ~ 13334245 (+)
G306480 tuba1c,LOC103148207,LOC106920718,LOC102311436,LOC101065103 other upstream 231750 12457601 ~ 12462536 (+)
G306103 NA other upstream 1178473 11515059 ~ 11515813 (+)
G305955 iqsec1 other upstream 1213186 11480669 ~ 11481100 (+)
G305869 NA other upstream 1367926 11325604 ~ 11326360 (+)
G305863 iqsec1,iqsec1b other upstream 1378850 11314184 ~ 11315436 (+)
ippk ippk,LOC107755999,LOC106566243 other downstream 899210 13674354 ~ 13692912 (+)
asic1b asic1,asic1b,LOC107721241,LOC107569540 other downstream 1404639 14179783 ~ 14476817 (+)
gpd1b gpd1,gpd1b,LOC107698578,LOC107727040,LOC107721242,LOC107694423 other downstream 1739448 14514592 ~ 14524976 (+)
dag1 dag1,LOC107757307,LOC107592827,LOC108415278,LOC108415277 other downstream 2981746 15756890 ~ 15799890 (+)
amigo3 amigo3 other downstream 3714217 16489361 ~ 16501684 (+)

Expression


Co-expression Network