G306503


Basic Information

Item Value
gene id G306503
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 12572422 ~ 12573759 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU363232
TTCGTCACTGTGGCGTCGTCAACCTTTCCAGTAACTGCCAAACCTGACACTCTCTGAAAAAGACTGGCATGAACACAAAAAGATTTAGATAATTACTGACATCTGatataataaaagcaaattTTATGACTGAGTATTTTGTCAAATacagtctttatttattatttaattttctacTATAATATCTTAACAAAATGCTCTGTTTAAATACTATAATGGTATTTTATTGATTCATTATGTGTCAATATTTTTTACGCTTCAATGCTAAttactgttatatttattaacttCACTGGGAAATTCATACATGTTTGGTGTGTTACCTCAGGGCTTCTGTTATAGCCTCTTCACTCATGTCTACCTGTGAATCCTTGTCCAGTGGAGTGTCGAGGTAGCCAAACCGCCTTAGTAAAGAAGAGGAAACTGCATAGAACACAGTAAAAAGCAATAATGGTAAATgcaagtttttcattttttcaataCTCCAAAGTTGGACAATACTCCAGAGTTTTTTCGGTGGACCCAGAGAGCCCGTGAGAATGTGCAGCCCCAAGAAGTGAGCGGTTCCTCCAGAGGTTTATATGTTAAAGAGCGCAGTGAGTCATCGCCAATCTGCTGAGCTGCAGTGATGCATTTCCTATGACTACAAGCGGTTATCCACTCCAAGGCATGAACAGCTGCAAAATGTTACAATCTCCTCGGTTCACTCCTCCACACGCTGCCTGACCAGCTGGAGAGAGCAgaagtaaaaatgttttcttgcaACACTTCCTGAAACCCAGAACCAACACAGCAACTGAGTTACGCATAGACTCTCTGAGCATAAAGCTGGTTTTGCACTGATTTACGCAAATGGTCCATTTCTCTTTGACGGAATCTTTTGTAGATCAGTTCCAGGAAACCTgagccaatgtttttttttctggcagaGAAAAGGCAGGAAGACTATAGCGCCAGAGAGCTCTGAGAGAGATTTACTAGGGTTTGTGTCCACATGTTAGGACTTGCAGAAACATGGAATGGAAGTTCTTCTGTTGTCTGTTGCCAACTGAAGAAGTTATTTCCACACATTAAGCTCAGTCCACTGTGACTTCAGCTAAAGTAGCTGCCTTCACGTTGCTTGTTTGAGTTGGTCTTCAAAGCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU363232 True 1145 lncRNA 0.40 2 12572422 12573759

Neighbor

gene id symbol gene type direction distance location
LOC113538096 LOC108255238,LOC108431540,LOC105912282,LOC106565442 coding upstream 9681 12533236 ~ 12562741 (+)
timeless timeless,LOC107689440 coding upstream 45144 12496309 ~ 12527278 (+)
prph prph coding upstream 86447 12474056 ~ 12485975 (+)
suox suox coding upstream 118101 12434509 ~ 12454321 (+)
mcrs1 mcrs1,LOC107696040 coding upstream 145389 12417610 ~ 12427033 (+)
pmela pmel coding downstream 11366 12585125 ~ 12595797 (+)
cdk2 cdk2,LOC107570445,LOC107683630 coding downstream 25310 12599069 ~ 12606053 (+)
sarnp sarnp coding downstream 34594 12608353 ~ 12626608 (+)
iars1 iars coding downstream 120527 12694286 ~ 12775144 (+)
atp2b2 atp2b2,LOC107570616,LOC107561799,LOC102776443,LOC106566233,LOC107746712 coding downstream 215733 12789492 ~ 12959106 (+)
G306479 NA non-coding upstream 124048 12437199 ~ 12448374 (+)
G306470 NA non-coding upstream 276693 12295369 ~ 12295729 (+)
G306452 NA non-coding upstream 282665 12284951 ~ 12289757 (+)
G306433 NA non-coding upstream 417872 12154295 ~ 12154550 (+)
G306432 NA non-coding upstream 420253 12143548 ~ 12152169 (+)
G306744 NA non-coding downstream 223989 12797748 ~ 12797982 (+)
G306756 NA non-coding downstream 330449 12904208 ~ 12904841 (+)
G306938 vgll4,vgll4b,LOC107750033,LOC107697562 non-coding downstream 622716 13196475 ~ 13283007 (+)
G306937 NA non-coding downstream 715030 13288789 ~ 13293439 (+)
G306959 NA non-coding downstream 757928 13331687 ~ 13334245 (+)
G306480 tuba1c,LOC103148207,LOC106920718,LOC102311436,LOC101065103 other upstream 109886 12457601 ~ 12462536 (+)
G306103 NA other upstream 1056609 11515059 ~ 11515813 (+)
G305955 iqsec1 other upstream 1091322 11480669 ~ 11481100 (+)
G305869 NA other upstream 1246062 11325604 ~ 11326360 (+)
G305863 iqsec1,iqsec1b other upstream 1256986 11314184 ~ 11315436 (+)
ippk ippk,LOC107755999,LOC106566243 other downstream 1100595 13674354 ~ 13692912 (+)
asic1b asic1,asic1b,LOC107721241,LOC107569540 other downstream 1606024 14179783 ~ 14476817 (+)
gpd1b gpd1,gpd1b,LOC107698578,LOC107727040,LOC107721242,LOC107694423 other downstream 1940833 14514592 ~ 14524976 (+)
dag1 dag1,LOC107757307,LOC107592827,LOC108415278,LOC108415277 other downstream 3183131 15756890 ~ 15799890 (+)
amigo3 amigo3 other downstream 3915602 16489361 ~ 16501684 (+)

Expression


Co-expression Network