G306432


Basic Information

Item Value
gene id G306432
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 12143548 ~ 12152169 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU363147
tattatcttccCCCAATAACATTTAGCAGGATTGTGTTTTGTAATTTCAATTATAATTACATAGGCAAGAAGGATTGGGAAGAAATCATTTCAGATCAGCTGAAGAGGCTGTTAGACACTTTTgattgtttaatattaataagtgTATTTTTCACCCTTACAAAAACTGCCACAAATATGATACGTTTGAAAGTGTTTTACTGGATATAAGGAACTGATGAACATAAGAATATGCAAACACAAGACacatagaaatagaaatagaaaaataagtCTATTCTACATCAAAacgataaataaacaaattttcgTTATTTgctgtaacaaataaaaaataccagTTTATCAAATTTTCAGACTAAGAGGCATTAAACAGGTAACAGTTCCAAAACAGTCTGTTGCACTTGGGTGCCTGGAAAAAACATTCCTTCACAAGCAGAAAAGATGTCTAGCAACCAGTGCAGGCGGCATAAGCACAGATTTCACACACATCCATAGGCATTGCAGCTGCAAGAGGATCAAGAAAAAATAGTTAGTCAGCTATACCTTCAGGTCTATGCTGGAATGCTCTGAAATTATATGAATGAATTATCTGATAAAATGGATGCTTACCTAGCCTGGAGAAGACCAGGGCAGAGCCACTTTGACGACAGAGCCCTAGAAACTCCTGGGGCAGGGTTGGGTTGCCACAAACTGCGCTGTAGCTGGTCTTAACTAGACGAGGATTCTGCTGTTTGGGGACAGAGCTACTGTCCAACAGTTGCTGAAGGACCTTCACTGATTCAAGTGAGTAGGAATTTTCTCCATCCTGCAAATGAACATTGAGAACTGTATAAGACTAATTTCTAAGGTGAAACTCTGTCAAAAACTATTAGTGGCTAGGTTTACTTGGTCCAGTTGaatcaaatttataaatttgaatAAAGTATGTCTCCGTTGAAGGAAAAGATGTTTAAATTGATAAAGTTCTTCTTGAATGCAATATCATAGTAAACCTTTCAGCTAATGGATAGAGCAATAAGGGCAATATCCATTCAGATACATTCACTATTTCTTGACAGTATGGCAATAAGtcacataattacataaattcCTGACTCACAAACACGGAAGCAAAAGCAGGCAAGATAATAATGGCATAACATCAAAGAAATCAAAAACTGTAGCACTTACCTGGACTTGGACAGCCTCAGAGACCAGGCAGAGAGTAGTCAAGAGAAGAGCGATTGAAATGATGGTCTTCATATTGATGTTTTGAAAGAAGATGTGGGTCTTTCACAGTTGTTCTCCAGGTGTTCTCACCTCAGTGTTATGTCCTGCCtctgcttctctttctctttataaaGGATTCATACCTCCAGTCCAGCCAGTCACAGCCAGGTTTTTTCCCTGCAGTTAATGAATAAACACAGTGTCG

Function

GO: NA

KEGG:

id description
ko05204 Chemical carcinogenesis - DNA adducts

RNA

RNA id representative length rna type GC content exon number start site end site
TU363147 True 1417 lncRNA 0.38 2 12143548 12152169

Neighbor

gene id symbol gene type direction distance location
alpl alpl,LOC107691326,LOC107685635 coding upstream 46792 12067624 ~ 12096756 (+)
barx1 barx1,LOC107727794,LOC107685643,LOC107691398 coding upstream 346114 11794011 ~ 11797434 (+)
fbln2 fbln2,LOC108254974 coding upstream 472089 11608922 ~ 11671459 (+)
hdac11 hdac11,LOC107749433,LOC107727860 coding upstream 560099 11543739 ~ 11583449 (+)
cfap92 NA coding upstream 870069 11256014 ~ 11273479 (+)
nmur3 LOC108281099,LOC108439501 coding downstream 24921 12177090 ~ 12185144 (+)
ephb2b ephb2b,LOC108255231,LOC108439490,LOC107727812,LOC107568432,LOC107691322,LOC101487531,LOC107685632,LOC102295218,LOC100712288 coding downstream 113536 12265705 ~ 12413095 (+)
mcrs1 mcrs1,LOC107696040 coding downstream 265441 12417610 ~ 12427033 (+)
suox suox coding downstream 282340 12434509 ~ 12454321 (+)
prph prph coding downstream 321887 12474056 ~ 12485975 (+)
G306300 NA non-coding upstream 201255 11942035 ~ 11942293 (+)
G306295 NA non-coding upstream 206137 11937184 ~ 11937411 (+)
G306290 cass4 non-coding upstream 213347 11929712 ~ 11930201 (+)
G306286 NA non-coding upstream 218115 11924861 ~ 11925433 (+)
G306284 NA non-coding upstream 220872 11922469 ~ 11922676 (+)
G306433 NA non-coding downstream 2126 12154295 ~ 12154550 (+)
G306452 NA non-coding downstream 132782 12284951 ~ 12289757 (+)
G306470 NA non-coding downstream 143200 12295369 ~ 12295729 (+)
G306479 NA non-coding downstream 285030 12437199 ~ 12448374 (+)
G306503 NA non-coding downstream 420253 12572422 ~ 12573759 (+)
G306103 NA other upstream 627735 11515059 ~ 11515813 (+)
G305955 iqsec1 other upstream 662448 11480669 ~ 11481100 (+)
G305869 NA other upstream 817188 11325604 ~ 11326360 (+)
G305863 iqsec1,iqsec1b other upstream 828112 11314184 ~ 11315436 (+)
dynlrb1 dynlrb1,LOC106565026 other upstream 922008 11214752 ~ 11221540 (+)
G306480 tuba1c,LOC103148207,LOC106920718,LOC102311436,LOC101065103 other downstream 305432 12457601 ~ 12462536 (+)
ippk ippk,LOC107755999,LOC106566243 other downstream 1522185 13674354 ~ 13692912 (+)
asic1b asic1,asic1b,LOC107721241,LOC107569540 other downstream 2027614 14179783 ~ 14476817 (+)
gpd1b gpd1,gpd1b,LOC107698578,LOC107727040,LOC107721242,LOC107694423 other downstream 2362423 14514592 ~ 14524976 (+)
dag1 dag1,LOC107757307,LOC107592827,LOC108415278,LOC108415277 other downstream 3604721 15756890 ~ 15799890 (+)

Expression


Co-expression Network