G306286


Basic Information

Item Value
gene id G306286
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 11924861 ~ 11925433 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU362971
GGTTAATCTCACAAAAACTGGAACTTTGACTTGTGCAGAAGTATGTGAAGCCTTTTATTTAGTAGCTTGTGGCACCTCCTTTTGCAGCCATTACTTCAACCAAACGTCTTCTGTAACCACTGACCAGTCTCTCACATCTGTCTTTGGGGATTTTTGCCCACTCCTCCTTGCAGAACTCAGCCAGCTGAGAGAGGTTGGAAGGATGTCTGGCATGTACCGCCCGCTTCAGGTCTAGCCACAAcatttcaattggattgagttCCGGACTTTGACTAGGCCAATCAACAGTATGAACCTTCTTTCTTTTAAGCCATTCCTTGGTGGATTTGCTTGAATGCTTAGGGTCGTTGTCTTGTTGCATCACCCATTTTCGGCCCAGCTTCAGCTCTCTGACTGATGGCAGGAGATTCTCTTTAAGAATTTGTTGATGGGTCTGAGAATTCAAGTTTCCTTGAATAATATGGAGTCGCCCTGGCCCGGAGGCAGAAAAGCAGCCCCAGACCTTCACatttccaccaccatgcttcactgttgggAGGAGGTTCTTTTCCTGGAATTCAATGTTggcttttc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU362971 True 573 lncRNA 0.46 1 11924861 11925433

Neighbor

gene id symbol gene type direction distance location
barx1 barx1,LOC107727794,LOC107685643,LOC107691398 coding upstream 127427 11794011 ~ 11797434 (+)
fbln2 fbln2,LOC108254974 coding upstream 253402 11608922 ~ 11671459 (+)
hdac11 hdac11,LOC107749433,LOC107727860 coding upstream 341412 11543739 ~ 11583449 (+)
cfap92 NA coding upstream 651382 11256014 ~ 11273479 (+)
map1lc3a map1lc3a,LOC107551126 coding upstream 689600 11224148 ~ 11235261 (+)
alpl alpl,LOC107691326,LOC107685635 coding downstream 142191 12067624 ~ 12096756 (+)
nmur3 LOC108281099,LOC108439501 coding downstream 251657 12177090 ~ 12185144 (+)
ephb2b ephb2b,LOC108255231,LOC108439490,LOC107727812,LOC107568432,LOC107691322,LOC101487531,LOC107685632,LOC102295218,LOC100712288 coding downstream 340272 12265705 ~ 12413095 (+)
mcrs1 mcrs1,LOC107696040 coding downstream 492177 12417610 ~ 12427033 (+)
suox suox coding downstream 509076 12434509 ~ 12454321 (+)
G306284 NA non-coding upstream 2185 11922469 ~ 11922676 (+)
LOC113537887 NA non-coding upstream 81256 11837338 ~ 11843605 (+)
G306199 NA non-coding upstream 170830 11752225 ~ 11754031 (+)
G306145 NA non-coding upstream 263440 11648300 ~ 11661421 (+)
G306106 NA non-coding upstream 381723 11542933 ~ 11543138 (+)
G306290 cass4 non-coding downstream 4279 11929712 ~ 11930201 (+)
G306295 NA non-coding downstream 11751 11937184 ~ 11937411 (+)
G306300 NA non-coding downstream 16602 11942035 ~ 11942293 (+)
G306432 NA non-coding downstream 218115 12143548 ~ 12152169 (+)
G306433 NA non-coding downstream 228862 12154295 ~ 12154550 (+)
G306103 NA other upstream 409048 11515059 ~ 11515813 (+)
G305955 iqsec1 other upstream 443761 11480669 ~ 11481100 (+)
G305869 NA other upstream 598501 11325604 ~ 11326360 (+)
G305863 iqsec1,iqsec1b other upstream 609425 11314184 ~ 11315436 (+)
dynlrb1 dynlrb1,LOC106565026 other upstream 703321 11214752 ~ 11221540 (+)
G306480 tuba1c,LOC103148207,LOC106920718,LOC102311436,LOC101065103 other downstream 532168 12457601 ~ 12462536 (+)
ippk ippk,LOC107755999,LOC106566243 other downstream 1748921 13674354 ~ 13692912 (+)
asic1b asic1,asic1b,LOC107721241,LOC107569540 other downstream 2254350 14179783 ~ 14476817 (+)
gpd1b gpd1,gpd1b,LOC107698578,LOC107727040,LOC107721242,LOC107694423 other downstream 2589159 14514592 ~ 14524976 (+)
dag1 dag1,LOC107757307,LOC107592827,LOC108415278,LOC108415277 other downstream 3831457 15756890 ~ 15799890 (+)

Expression


Co-expression Network