hrh1 (hrh1)


Basic Information

Item Value
gene id hrh1
gene name hrh1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 13140570 ~ 13161692 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932905.2
cacacacacagagagagacagagagagagagagagagagagagaaagagagaaagagagacacgcGTGCTTCCTTCCGACTCCACTGCTGTCCTTCATCTACACGgaaTTCACTTATGGAAATATCGATGAATGACCATTGGGTGGATACCATTATCCAGACTTTTGACATCAGGTGACAATACTAGAATACTCCAATGGAGACTAAGACGGGCGGTGAAGTCAATAAAATCCTGCAAGACCATGCCAGCTTAAATTTTACAACCTATTTAAATGCATCTCTTTCCCTCCACCATCATGTGAACAATGCAGTGCTGGGGATAATTCTGGGCATGTTGTGTCTCCTGACAACCATCATGAACATTCTGGTTCTTCTTGCTGTGAGGAAGGAACGTACTTTACATACCGTGGGGAACCTTTATATCGTCAGCCTCTCTTTAGCAGATCTAATAGTTGGGGCAACTGTAATGCCACTAAACCTTGTCTATCTACTTGAGGATGAATGGAAACTTGGTCGTGTGGTTTGTCAGTTCTGGTTGGTAATGGATTATGTAGCTAGCACGGCCTCaattttcagtttgtttatcCTTTGCCTGGACAGATATCAGTCTGTTAGGCACCCACTGAGGTATCTGAAATATCGAACACGGGGAAGAGCGACACTGATGATTTGTTTTGCTTGGCTTCTCTCCATGATGTGGATTATTCCCATTTTGGGATGGAGGATGTTTGCTAATGTTGATCGGAAACCTGAGCTAGAAAGCAAGTGCGACACGGACTTCCGCTTCGTCACATGGTTTAAAGTGCTGACCGCCATTCTCAACTTTTACATCCCATCATTCCTGATGCTATGGTTCTATTCGCAAATTTTCATAGCTGTGCGAGAACATTACAAGCAATGGGAGAGTGTCACTATTGCTAAGGTGGTGGCAGATGAAGGCATAAATGTGCAAAGTTTAAAACATCAGAGAACATTCTGTAAAATGGCAGAGGAAGAGAATCTGGCCTTGCAGACTTACTCTCAAAAGGAAGGTATATTGGATCAGTATACTTTGGAGCAGCCATACAACTCAAGGGACACCAATGAGGAGAACGGTGAATCCCTGGGTGAtaaaaaatccaaacacagGAAAACCTCATTTTTTAAGATTACAAAACCTAAGAAGAAAACTGTGAGGGATCCCCGTGAGGTTTCATCAGTAAACCAGGAGGTAAATTCTGAAACACCTTCAAAGGATCCATCTATACCTCTGGGCATTTTGCAACATGAAGAAGATGCAGATCTCAAAATGTTTGTATCTGTTACTGACTGTAATGTATTAGTGCCAAATTCGGTTGCTAATATTTGTGAGGTAACACCCAACACTGACGTTCACAAACACATCACCATTCTCTGTAACGATGATGCTAATGCACAGTCACCTGTATCGCAAGGGTCATGGATGCACGACGATGGGCCAATGATAGACGGTAGCAACACTATGACTTTGAGGCAAACATGGCAGAAATTCTGCGAACAGTCCAAGCAGTGTGTCCAGAACATGCGCGTTCATAAAGAACGGAAAGCGGTGAGGCAGTTGGGCTTCATCATCGGAGCTTTTTTGGTGTGCTGGATCCCGTATTTTATCACCTTCATGGTCATGGCGCTGTGCAACACATGCGTCCATCATGACCTCCACATGTTCACTATATGGTTGGGCTACATCAACTCCACTCTGAACCCCTTTATTTATCCTCTTTGCAATGAGAATTTCAAAAGAGTATTTAAAAAGATCTTTCGTATCAAGCAGTGATTTTTGTCTGTAAAGAGTGAATGTGTAGCAGCTGCGTATGTCTATGTAAACATAGTTATTTTGCctttatgtgtgtaaatgtgtatttttaaggGTTGTAGACTTTGTTTGGATTATTATGATATTAAACACCTATGTTAATTGGCTTATATCTTTGGTGCTAGCCAGTGTTATTGTATGCTTGTAATCTGCATCAGATTAAGGCATCAG
>XM_034314384.1
GACACTTCACAAAGCATGTTCACACAGACAACTTCATTaatcatgtttgtgtttgtgacagCTACAAACTCTCCTAGCTGGTCAAGGATCACTTCACTTCCTGCAACAAGAGAAACATCCTCAAGCTGGTTGGCAAGTGTTTCCCAACAATTGTTGCTGTGATCTCCATATTTTCAACACTACAACCAAAAGATTACACTGATTTCATCATTTCAACTAAAACACCAAAAAGTCCCTTCCATAGCATAAGGAGCATAAGGAGGAGAAAGTGCAGCCAGAAATgaaTTCACTTATGGAAATATCGATGAATGACCATTGGGTGGATACCATTATCCAGACTTTTGACATCAGGTGACAATACTAGAATACTCCAATGGAGACTAAGACGGGCGGTGAAGTCAATAAAATCCTGCAAGACCATGCCAGCTTAAATTTTACAACCTATTTAAATGCATCTCTTTCCCTCCACCATCATGTGAACAATGCAGTGCTGGGGATAATTCTGGGCATGTTGTGTCTCCTGACAACCATCATGAACATTCTGGTTCTTCTTGCTGTGAGGAAGGAACGTACTTTACATACCGTGGGGAACCTTTATATCGTCAGCCTCTCTTTAGCAGATCTAATAGTTGGGGCAACTGTAATGCCACTAAACCTTGTCTATCTACTTGAGGATGAATGGAAACTTGGTCGTGTGGTTTGTCAGTTCTGGTTGGTAATGGATTATGTAGCTAGCACGGCCTCaattttcagtttgtttatcCTTTGCCTGGACAGATATCAGTCTGTTAGGCACCCACTGAGGTATCTGAAATATCGAACACGGGGAAGAGCGACACTGATGATTTGTTTTGCTTGGCTTCTCTCCATGATGTGGATTATTCCCATTTTGGGATGGAGGATGTTTGCTAATGTTGATCGGAAACCTGAGCTAGAAAGCAAGTGCGACACGGACTTCCGCTTCGTCACATGGTTTAAAGTGCTGACCGCCATTCTCAACTTTTACATCCCATCATTCCTGATGCTATGGTTCTATTCGCAAATTTTCATAGCTGTGCGAGAACATTACAAGCAATGGGAGAGTGTCACTATTGCTAAGGTGGTGGCAGATGAAGGCATAAATGTGCAAAGTTTAAAACATCAGAGAACATTCTGTAAAATGGCAGAGGAAGAGAATCTGGCCTTGCAGACTTACTCTCAAAAGGAAGGTATATTGGATCAGTATACTTTGGAGCAGCCATACAACTCAAGGGACACCAATGAGGAGAACGGTGAATCCCTGGGTGAtaaaaaatccaaacacagGAAAACCTCATTTTTTAAGATTACAAAACCTAAGAAGAAAACTGTGAGGGATCCCCGTGAGGTTTCATCAGTAAACCAGGAGGTAAATTCTGAAACACCTTCAAAGGATCCATCTATACCTCTGGGCATTTTGCAACATGAAGAAGATGCAGATCTCAAAATGTTTGTATCTGTTACTGACTGTAATGTATTAGTGCCAAATTCGGTTGCTAATATTTGTGAGGTAACACCCAACACTGACGTTCACAAACACATCACCATTCTCTGTAACGATGATGCTAATGCACAGTCACCTGTATCGCAAGGGTCATGGATGCACGACGATGGGCCAATGATAGACGGTAGCAACACTATGACTTTGAGGCAAACATGGCAGAAATTCTGCGAACAGTCCAAGCAGTGTGTCCAGAACATGCGCGTTCATAAAGAACGGAAAGCGGTGAGGCAGTTGGGCTTCATCATCGGAGCTTTTTTGGTGTGCTGGATCCCGTATTTTATCACCTTCATGGTCATGGCGCTGTGCAACACATGCGTCCATCATGACCTCCACATGTTCACTATATGGTTGGGCTACATCAACTCCACTCTGAACCCCTTTATTTATCCTCTTTGCAATGAGAATTTCAAAAGAGTATTTAAAAAGATCTTTCGTATCAAGCAGTGATTTTTGTCTGTAAAGAGTGAATGTGTAGCAGCTGCGTATGTCTATGTAAACATAGTTATTTTGCctttatgtgtgtaaatgtgtatttttaaggGTTGTAGACTTTGTTTGGATTATTATGATATTAAACACCTATGTTAATTGGCTTATATCTTTGGTGCTAGCCAGTGTTATTGTATGCTTGTAATCTGCATCAGATTAAGGCATCAG
>XM_034314385.1
GGCATATTGTTGACGAGGGGAGAATCAGGTCACTGAGGATCTGAAATAGTGTAAAAGCTCAGTTTGTTCTGCATGCGCTCTACAGGTGGCAGCTGGAGTTTGGAGgaaTTCACTTATGGAAATATCGATGAATGACCATTGGGTGGATACCATTATCCAGACTTTTGACATCAGGTGACAATACTAGAATACTCCAATGGAGACTAAGACGGGCGGTGAAGTCAATAAAATCCTGCAAGACCATGCCAGCTTAAATTTTACAACCTATTTAAATGCATCTCTTTCCCTCCACCATCATGTGAACAATGCAGTGCTGGGGATAATTCTGGGCATGTTGTGTCTCCTGACAACCATCATGAACATTCTGGTTCTTCTTGCTGTGAGGAAGGAACGTACTTTACATACCGTGGGGAACCTTTATATCGTCAGCCTCTCTTTAGCAGATCTAATAGTTGGGGCAACTGTAATGCCACTAAACCTTGTCTATCTACTTGAGGATGAATGGAAACTTGGTCGTGTGGTTTGTCAGTTCTGGTTGGTAATGGATTATGTAGCTAGCACGGCCTCaattttcagtttgtttatcCTTTGCCTGGACAGATATCAGTCTGTTAGGCACCCACTGAGGTATCTGAAATATCGAACACGGGGAAGAGCGACACTGATGATTTGTTTTGCTTGGCTTCTCTCCATGATGTGGATTATTCCCATTTTGGGATGGAGGATGTTTGCTAATGTTGATCGGAAACCTGAGCTAGAAAGCAAGTGCGACACGGACTTCCGCTTCGTCACATGGTTTAAAGTGCTGACCGCCATTCTCAACTTTTACATCCCATCATTCCTGATGCTATGGTTCTATTCGCAAATTTTCATAGCTGTGCGAGAACATTACAAGCAATGGGAGAGTGTCACTATTGCTAAGGTGGTGGCAGATGAAGGCATAAATGTGCAAAGTTTAAAACATCAGAGAACATTCTGTAAAATGGCAGAGGAAGAGAATCTGGCCTTGCAGACTTACTCTCAAAAGGAAGGTATATTGGATCAGTATACTTTGGAGCAGCCATACAACTCAAGGGACACCAATGAGGAGAACGGTGAATCCCTGGGTGAtaaaaaatccaaacacagGAAAACCTCATTTTTTAAGATTACAAAACCTAAGAAGAAAACTGTGAGGGATCCCCGTGAGGTTTCATCAGTAAACCAGGAGGTAAATTCTGAAACACCTTCAAAGGATCCATCTATACCTCTGGGCATTTTGCAACATGAAGAAGATGCAGATCTCAAAATGTTTGTATCTGTTACTGACTGTAATGTATTAGTGCCAAATTCGGTTGCTAATATTTGTGAGGTAACACCCAACACTGACGTTCACAAACACATCACCATTCTCTGTAACGATGATGCTAATGCACAGTCACCTGTATCGCAAGGGTCATGGATGCACGACGATGGGCCAATGATAGACGGTAGCAACACTATGACTTTGAGGCAAACATGGCAGAAATTCTGCGAACAGTCCAAGCAGTGTGTCCAGAACATGCGCGTTCATAAAGAACGGAAAGCGGTGAGGCAGTTGGGCTTCATCATCGGAGCTTTTTTGGTGTGCTGGATCCCGTATTTTATCACCTTCATGGTCATGGCGCTGTGCAACACATGCGTCCATCATGACCTCCACATGTTCACTATATGGTTGGGCTACATCAACTCCACTCTGAACCCCTTTATTTATCCTCTTTGCAATGAGAATTTCAAAAGAGTATTTAAAAAGATCTTTCGTATCAAGCAGTGATTTTTGTCTGTAAAGAGTGAATGTGTAGCAGCTGCGTATGTCTATGTAAACATAGTTATTTTGCctttatgtgtgtaaatgtgtatttttaaggGTTGTAGACTTTGTTTGGATTATTATGATATTAAACACCTATGTTAATTGGCTTATATCTTTGGTGCTAGCCAGTGTTATTGTATGCTTGTAATCTGCATCAGATTAAGGCATCAG

Function

symbol description
hrh1 Enables histamine receptor activity. Predicted to act upstream of or within several processes, including eosinophil chemotaxis; positive regulation of vasoconstriction; and regulation of vascular permeability. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Is expressed in brain; gill; liver; and pleuroperitoneal region. Orthologous to human HRH1 (histamine receptor H1).

NR:

description
histamine H1 receptor-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0065008 regulation of biological quality biological_process
GO:0008015 blood circulation biological_process
GO:0003018 vascular process in circulatory system biological_process
GO:0016020 membrane cellular_component
GO:0004969 histamine receptor activity molecular_function

KEGG:

id description
K04149 HRH1; histamine receptor H1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932905.2 False 2002 mRNA 0.42 2 13140570 13161692
XM_034314384.1 True 2179 mRNA 0.41 2 13147251 13161692
XM_034314385.1 False 2002 mRNA 0.42 2 13140721 13161692

Neighbor

gene id symbol gene type direction distance location
slc6a1b slc6a1,slc6a1b,LOC107670967,LOC107746710,LOC107697564,LOC107750027 coding upstream 66812 13059983 ~ 13073758 (+)
slc6a11b slc6a11,LOC107750026,LOC107697565,LOC107561801 coding upstream 129511 12975527 ~ 13011059 (+)
atp2b2 atp2b2,LOC107570616,LOC107561799,LOC102776443,LOC106566233,LOC107746712 coding upstream 181464 12789492 ~ 12959106 (+)
iars1 iars coding upstream 365426 12694286 ~ 12775144 (+)
sarnp sarnp coding upstream 513962 12608353 ~ 12626608 (+)
atg7 atg7,LOC107697561,LOC107750032 coding downstream 5463 13167155 ~ 13279101 (+)
syn2b syn2,LOC107758022 coding downstream 197232 13358924 ~ 13425482 (+)
pparg pparg,LOC107742034,LOC107667870,LOC107571218 coding downstream 278967 13440659 ~ 13476589 (+)
tsen2 tsen2 coding downstream 319719 13481411 ~ 13495985 (+)
mkrn2 mkrn2 coding downstream 346717 13508409 ~ 13521412 (+)
G306756 NA non-coding upstream 235729 12904208 ~ 12904841 (+)
G306744 NA non-coding upstream 342588 12797748 ~ 12797982 (+)
G306503 NA non-coding upstream 566811 12572422 ~ 12573759 (+)
G306479 NA non-coding upstream 692196 12437199 ~ 12448374 (+)
G306470 NA non-coding upstream 844841 12295369 ~ 12295729 (+)
G306938 vgll4,vgll4b,LOC107750033,LOC107697562 non-coding downstream 34783 13196475 ~ 13283007 (+)
G306937 NA non-coding downstream 127097 13288789 ~ 13293439 (+)
G306959 NA non-coding downstream 169995 13331687 ~ 13334245 (+)
G306961 NA non-coding downstream 171114 13332806 ~ 13333248 (+)
G307079 NA non-coding downstream 188761 13350453 ~ 13350680 (+)
G306480 tuba1c,LOC103148207,LOC106920718,LOC102311436,LOC101065103 other upstream 678034 12457601 ~ 12462536 (+)
G306103 NA other upstream 1624757 11515059 ~ 11515813 (+)
G305955 iqsec1 other upstream 1659470 11480669 ~ 11481100 (+)
G305869 NA other upstream 1814210 11325604 ~ 11326360 (+)
G305863 iqsec1,iqsec1b other upstream 1825134 11314184 ~ 11315436 (+)
ippk ippk,LOC107755999,LOC106566243 other downstream 512662 13674354 ~ 13692912 (+)
asic1b asic1,asic1b,LOC107721241,LOC107569540 other downstream 1018091 14179783 ~ 14476817 (+)
gpd1b gpd1,gpd1b,LOC107698578,LOC107727040,LOC107721242,LOC107694423 other downstream 1352900 14514592 ~ 14524976 (+)
dag1 dag1,LOC107757307,LOC107592827,LOC108415278,LOC108415277 other downstream 2595198 15756890 ~ 15799890 (+)
amigo3 amigo3 other downstream 3327669 16489361 ~ 16501684 (+)

Expression


Co-expression Network