G335887 (LOC108257212)


Basic Information

Item Value
gene id G335887
gene name LOC108257212
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 50894 ~ 53817 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU397757
tgttttttctcctcctggTCCACTAAGTACTCTTCAATATCAAACAAACTTTTGTAAAAGTTCATGTTTTTGGAGATTAGCGGGTCCCCTGGGTTACGCTGGAGGTAAGTGTGTGCTGCTGATACAGCTTTCTCCAGattattcatctgataATAAGCGAATTGTAAATACCGGTACGGCGTCCTCGTGCCAAAGGCCTCCAGAGTTTCAGGGTTCGGATATTTTTTAGAAAACACGGCCATTTCCGCTTTACACTTTTTAACGCAAGCCGCGCGCGTGAGGATGTGTTTGATGATTTGCAGGCTCGTGTCCGTGTCCATGTCGGTGTCGGTGTCGTGGAGGTTGTCCCGGGTGCACGCGCGGCTGCAGCGCGCCTCGCTCTCCTTCAGTAGTCGGTGGAGGCGCAGGCTAAGTTCCAAGTAGCGCGCACTCTCCACCCAGTCCCGCGCGCCATACCGCTCCAGCGCAAAACCGTACGCCGAGTCCAGCGGCATCAGATCCGCATGCGGGAAATCCTCCGCACTGTAGTGCTCATACTGACATCGAACCGCGGGCACGAGCACAGCCACGCACAGAAGCGCACACACATAAGCCATATTCATTCACGCCTTTGTAACCGTTAAACCAGCTCGTGCTCCTCTTTATCCACAGCGCGAGAGCGGCGACATGTCTGTCGGCACGTAGCTTAACATGCTGTGTGGGagtggaaatcttttttttttttttaaaggaatttgaaAAGTTTTGGGGTGCA
>TU397762
tgttttttctcctcctggTCCACTAAGTACTCTTCAATATCAAACAAACTTTTGTAAAAGTTCATGTTTTTGGAGATTAGCGGGTCCCCTGGGTTACGCTGGAGGTAAGTGTGTGCTGCTGATACAGCTTTCTCCAGattattcatctgataATAAGCGAATTGTAAATACCGGTACGGCGTCCTCGTGCCAAAGGCCTCCAGAGTTTCAGGGTTCGGATATTTTTTAGAAAACACGGCCATTTCCGCTTTACACTTTTTAACGCAAGCCGCGCGCGTGAGGATGTGTTTGATGATTTGCAGGCTCGTGTCCGTGTCCATGTCGGTGTCGGTGTCGTGGAGGTTGTCCCGGGTGCACGCGCGGCTGCAGCGCGCCTCGCTCTCCTTCAGTAGTCGGTGGAGGCGCAGGCTAAGTTCCAAGTAGCGCGCACTCTCCACCCAGTCCCGCGCGCCATACCGCTCCAGCGCAAAACCGTACGCCGAGTCCAGCGGCATCAGATCCGCATGCGGGAAATCCTCCGCACTGTAGTGCTCATACTGACATCGAACCGCGGGCACGAGCACAGCCACGCACAGAAGCGCACACACATAAGCCATATTCATTCACGCCTTTGTAACCGTTAAACCAGCTCGTGCTCCTCTTTATCCACAGCGCGAGAGCGGCGACATGTCTGTCGGCACGTAGCTTAACATGCTGTGTGGGagtggaaatcttttttttttttttaaaggaatttgaaAAGTTTTGGGGTGCAGGGGCCTGTCTGGGTCCTAAAGCCTGAATCTCTGTACTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU397757 False 754 lncRNA 0.52 2 50894 53778
TU397762 True 793 lncRNA 0.52 2 50894 53817

Neighbor

gene id symbol gene type direction distance location
fkbp10a LOC108257211 coding downstream 1291 55108 ~ 88515 (+)
LOC113529063 LOC108256844,LOC108256868,LOC108256846,LOC108262172 coding downstream 125999 179816 ~ 180757 (+)
LOC113529056 LOC108262172 coding downstream 138136 191953 ~ 192894 (+)
LOC113529062 LOC108256868,LOC108256847,LOC108256843,LOC108256846,LOC108262172 coding downstream 150907 204724 ~ 205665 (+)
LOC113529061 LOC108256842,LOC108256840,LOC108256799,LOC108262172 coding downstream 171936 225753 ~ 226697 (+)
G335882 NA non-coding upstream 20746 29943 ~ 30148 (+)
G335876 NA non-coding upstream 29886 14878 ~ 21008 (+)
G335896 NA non-coding downstream 71377 125194 ~ 142530 (+)
G335897 LOC107737118 non-coding downstream 73221 127038 ~ 144471 (+)
G336016 NA non-coding downstream 159329 213146 ~ 270883 (+)
G336041 NA non-coding downstream 300213 354030 ~ 404443 (+)
G336078 NA non-coding downstream 386622 440439 ~ 440785 (+)
G336034 NA other downstream 233032 286849 ~ 287215 (+)
G336161 LOC108257052 other downstream 685552 739369 ~ 749674 (+)
G336172 NA other downstream 740300 794117 ~ 794695 (+)
G336213 NA other downstream 919852 973669 ~ 976321 (+)
mllt11 mllt11 other downstream 1079138 1132955 ~ 1136124 (+)

Expression


Co-expression Network