G343620


Basic Information

Item Value
gene id G343620
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 13969234 ~ 13994319 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU407024
AAATAATAGAAGTAACAGCAGAGAGTAAGCAGGGTGCAGAGACAACAGAGACGGTGAGATACGGACAAGGCCATGAGAGAACATGAGCAATGGAGGAGTGAGAAACACAAGACCAAACCCAGAGCTGGACAAGTCTCATTAGTTCTGGCAAAACACATcatgaaagagacagacagatggaaggAGAAGAAAACTGTACCATAGATTAGCACCACAGATTCCTCGATGGCGTGCTGGTAGCTGAACTGAGAGTCCAGCAGGGCTCGGCTCATGAAAGAGCCGAAGAACGTGGACTGGTACCAACCCACGTGCAGATGGTCGATGTTGACGTGACGGAGACTTCTCATCATCTCCATCTGATACTGAACTGGTGGAGAGGCTCTGTATGCTCGTTAGGGAGTGAATTTATAACTTTTTGCAGCTCATATAGTTCAAGGCCTCTCACTTTGCTTATGAGGGCTGTTTAAATACTCATTAGGCTCCATCATTTGTCCAGGTATAGCAAAGGCTTATGTGCATGCAAACACCAAAAGGACATGAACGAGTGAGGGGAGGTAGAGAACCTTATTGACTTTCTTCTTATT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU407024 True 584 lncRNA 0.46 2 13969234 13994319

Neighbor

gene id symbol gene type direction distance location
lrrc14b lrrc14b coding upstream 838845 13126153 ~ 13130389 (+)
LOC113535917 LOC108256774 coding upstream 843955 13115196 ~ 13125279 (+)
gatad1 gatad1 coding upstream 858533 13106863 ~ 13110701 (+)
lypla2 lypla2,lypa2 coding upstream 867144 13095231 ~ 13102090 (+)
pithd1 pithd1,LOC107654704 coding upstream 874693 13090286 ~ 13094541 (+)
utp23 utp23,LOC102791607 coding downstream 30055 14024374 ~ 14027981 (+)
stmnd1 stmnd1 coding downstream 107050 14101369 ~ 14108436 (+)
rbm24a rbm24,rbm24a,LOC107696536,LOC105905339,LOC107706227 coding downstream 117104 14111423 ~ 14121598 (+)
cap2 cap2 coding downstream 134574 14128893 ~ 14158705 (+)
vps28 vps28,LOC107592928,LOC107696523,LOC107754273 coding downstream 171580 14165899 ~ 14170688 (+)
G343522 NA non-coding upstream 202633 13763084 ~ 13766601 (+)
G342836 NA non-coding upstream 667431 13301539 ~ 13301803 (+)
G342735 NA non-coding upstream 821388 13147045 ~ 13147846 (+)
LOC117595825 NA non-coding upstream 1282021 12684133 ~ 12687213 (+)
G342629 NA non-coding upstream 1289904 12679115 ~ 12679330 (+)
G343671 NA non-coding downstream 82138 14076457 ~ 14078541 (+)
G343690 NA non-coding downstream 165518 14159837 ~ 14161453 (+)
G343723 extl1,LOC102196503,LOC101464589,LOC102793765 non-coding downstream 333875 14328194 ~ 14329982 (+)
G343841 NA non-coding downstream 551280 14545599 ~ 14545807 (+)
G343846 NA non-coding downstream 628187 14622506 ~ 14622728 (+)
G342718 klhl43,LOC108256975,LOC108426671,LOC107591641,LOC107742826,LOC107696549,LOC107589442,LOC107706211 other upstream 888005 13077170 ~ 13081229 (+)
si:ch211-199g17.2 NA other upstream 1014509 12904623 ~ 12954725 (+)
LOC113536228 nobox other upstream 1176761 12785837 ~ 12792473 (+)
fabp3 fabp3,LOC106570598,LOC108426441,LOC105892250,LOC107742844,LOC107669374 other upstream 1273722 12692007 ~ 12695512 (+)
sostdc1b LOC108257373 other upstream 2153961 11810109 ~ 11815273 (+)
slc30a8 slc30a8,slc30a2,rprd1a,LOC108256818,LOC107754284,LOC107696534,LOC107696508,LOC106570487,LOC107654669,LOC107592974 other downstream 211402 14205721 ~ 14231844 (+)
med30 med30,LOC107706236,LOC107754270,LOC107654723 other downstream 239198 14233517 ~ 14250931 (+)
tnrc18 tnrc18,LOC107581723,LOC107742388 other downstream 1364474 15358793 ~ 15421748 (+)
G344364 actb2,actb,actbb,actb1,LOC102799139,LOC103039558,LOC107581721 other downstream 1439803 15434122 ~ 15484581 (+)
micall2a micall2 other downstream 2723152 16717471 ~ 16732200 (+)

Expression


Co-expression Network